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The map label for this gene is ydcM [C]

Identifier: 148652877

GI number: 148652877

Start: 1290087

End: 1291193

Strand: Direct

Name: ydcM [C]

Synonym: PsycPRwf_1070

Alternate gene names: 148652877

Gene position: 1290087-1291193 (Clockwise)

Preceding gene: 148652876

Following gene: 148652878

Centisome position: 43.31

GC content: 41.19

Gene sequence:

>1107_bases
ATGAAAACACTCAAGCTACGCATCAAAGACAAACATGCAAACCAGCTAAACAAACTAGCTGGGAGTGTTAACTATGCGTG
GAACTATGTTAATGCGTTAAGCTTTGAGCATTTAAGACGCACAGGTAAGTACTTTTTGGCCTATGATTTAAGCCAATACA
CCAAAGGCAGTGGTGAGTATTTAGGCTTACACTCGCAAACTTTGCAAGCCATTAACGAAACTCATGCCAAATCTCGTAAG
CAGTTTAAAAAAGCCAAACTTAATTGGCGAACCAACCGACCCGATGCCAAACGTAAATCACTTGGCTGGATACCCTTTAA
AAAGTCTGCCATAAAGTATCTACGTAGCAGACAAACAGGAAAGAAAGCACTTAAATCAACCATACAGCTATCGCTCTGTA
AAGGTCGAAAGGTAATCATAGACGTATTCGATAGCTATAATCTATCTTTGTATCAAATCAATACGCTTGAGATAGTGCAA
GACAGCCGTAATCGTTGGTATGCCTGTATTACTGTTAAAGACTTTCCTAAGCAAGTGAGTGGTAAAGGTAGTGTTGGTAT
TGACTTAGGCTTAAAGCAGTCTGCTACCACATCAACGGGCGATAAACTACAGATTAAGCAGACTCAAAAATGGGCGAATA
AATTAGCAGTCGCCCAGCGTGCAAACAATAAAAGCCGGGCAAAGGCAATACACGCCAAAATTAAAAACTCAAGATTAGAT
GCCATACACAAATTCACCACCCAATTAGTTAAGGATAATGCCTTAATTGTGGTTGGTGATGTTAAATCACGCTCATTCAC
TAATTCGATGACCAACCTAGCTAAATCAACATACGATGCAGGATGGTTTGAACTCAAAAGACAACTGGAATATAAATGCA
AGTATGCAGGTTGTCAGCTTGAGATGGTGAATGAGAGTTACACTACCCAAACCTGTTCGCACTGCCTTAAAATAAGTGAT
AGTAGTCCAAAAGGTAGAGCAGGTCTTGGAATAAGAGGATGGAGGTGTGCTGAGTGTGGCACATGGCATGATAGAGATAT
CAATGCTGCTAAGAACATCCTTGCGGTCGGGCTTGACCGTCTAGCTGTAGCAATCCCCTCGGTTTAG

Upstream 100 bases:

>100_bases
AAAACCACCCACTTCAGGGGGTAGATATAAGGCGACACACACTGTCGTGATCAGCATTTAAAGTATTGCAAGTTAAAATT
AACCTCGCCATACTAACCCT

Downstream 100 bases:

>100_bases
CGAGGGGAGGAAGTCAAGCCTTCTAATAACTTAATTGGGGAAGGCGCATTAGAAAAAGGTCTTGAGCAGTTGGCAAGATT
TAATTGCAAAAAAGTATTTG

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MKTLKLRIKDKHANQLNKLAGSVNYAWNYVNALSFEHLRRTGKYFLAYDLSQYTKGSGEYLGLHSQTLQAINETHAKSRK
QFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLRSRQTGKKALKSTIQLSLCKGRKVIIDVFDSYNLSLYQINTLEIVQ
DSRNRWYACITVKDFPKQVSGKGSVGIDLGLKQSATTSTGDKLQIKQTQKWANKLAVAQRANNKSRAKAIHAKIKNSRLD
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQLEMVNESYTTQTCSHCLKISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLAVAIPSV

Sequences:

>Translated_368_residues
MKTLKLRIKDKHANQLNKLAGSVNYAWNYVNALSFEHLRRTGKYFLAYDLSQYTKGSGEYLGLHSQTLQAINETHAKSRK
QFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLRSRQTGKKALKSTIQLSLCKGRKVIIDVFDSYNLSLYQINTLEIVQ
DSRNRWYACITVKDFPKQVSGKGSVGIDLGLKQSATTSTGDKLQIKQTQKWANKLAVAQRANNKSRAKAIHAKIKNSRLD
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQLEMVNESYTTQTCSHCLKISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLAVAIPSV
>Mature_368_residues
MKTLKLRIKDKHANQLNKLAGSVNYAWNYVNALSFEHLRRTGKYFLAYDLSQYTKGSGEYLGLHSQTLQAINETHAKSRK
QFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLRSRQTGKKALKSTIQLSLCKGRKVIIDVFDSYNLSLYQINTLEIVQ
DSRNRWYACITVKDFPKQVSGKGSVGIDLGLKQSATTSTGDKLQIKQTQKWANKLAVAQRANNKSRAKAIHAKIKNSRLD
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQLEMVNESYTTQTCSHCLKISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLAVAIPSV

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=233, Percent_Identity=33.0472103004292, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41546; Mature: 41546

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLKLRIKDKHANQLNKLAGSVNYAWNYVNALSFEHLRRTGKYFLAYDLSQYTKGSGEY
CCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCE
LGLHSQTLQAINETHAKSRKQFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLRSRQTG
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCHH
KKALKSTIQLSLCKGRKVIIDVFDSYNLSLYQINTLEIVQDSRNRWYACITVKDFPKQVS
HHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCEEEEECCCCCEEEEEEEECCCHHHC
GKGSVGIDLGLKQSATTSTGDKLQIKQTQKWANKLAVAQRANNKSRAKAIHAKIKNSRLD
CCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHH
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQL
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEE
EMVNESYTTQTCSHCLKISDSSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDR
EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
LAVAIPSV
HHHCCCCC
>Mature Secondary Structure
MKTLKLRIKDKHANQLNKLAGSVNYAWNYVNALSFEHLRRTGKYFLAYDLSQYTKGSGEY
CCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCE
LGLHSQTLQAINETHAKSRKQFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLRSRQTG
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCHH
KKALKSTIQLSLCKGRKVIIDVFDSYNLSLYQINTLEIVQDSRNRWYACITVKDFPKQVS
HHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCEEEEECCCCCEEEEEEEECCCHHHC
GKGSVGIDLGLKQSATTSTGDKLQIKQTQKWANKLAVAQRANNKSRAKAIHAKIKNSRLD
CCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHH
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQL
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEE
EMVNESYTTQTCSHCLKISDSSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDR
EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
LAVAIPSV
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]