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The map label for this gene is yafC [C]

Identifier: 148652840

GI number: 148652840

Start: 1239858

End: 1240754

Strand: Direct

Name: yafC [C]

Synonym: PsycPRwf_1033

Alternate gene names: 148652840

Gene position: 1239858-1240754 (Clockwise)

Preceding gene: 148652838

Following gene: 148652847

Centisome position: 41.62

GC content: 46.38

Gene sequence:

>897_bases
ATGGTAATAATGATGAAGTGGGAAGGTATTAGCGAGTTTGTGTACGTAGCAGAGTATGAGAGCTTTACCCGAGCGGCCAA
AGAGCTGGGTATTTCTATCGCTCAGGTCAGTCGGCAGGTAAGTGCCTTAGAAAAACGGCTAAACATTAAGCTGTTGTATC
GCACCACCCGCAAGATTTCATTGACCGAAGAGGGGCAGGTGTTTTATAAGCACTGCCGAGGGGTACTTGATGGGCTTGAT
GCCGCCGAGCAAGCAATTAGTAGCTTGCAGTCAAAGCCGCAAGGTAAGATTAAATTGACCGCACCGGTGACCTATGGTGA
GCAGCAATTGTTGCCTTTGATTAATGATTTTATCGTACAGTATCCGGATATTAAGGTCACGGCCTTTTTAAGCAATCAAA
AGCTAGATTTGGTCGAGGGCGGCTATGATCTGGCGGTGCGTATTGGCAAACTAAGCGACTCGACGTTAATGGCAAAAAAG
CTCGGTCACCGTACCAATTTTGTGTGCGCCGCGCCGGATTATTTAGACCGCTATGGTACGCCGCAAACTTTAGCTGAGCT
GGCTAGTCACAACTGTTTGCTAGGCAGTTTGGATTATTGGCACTTTAAGCAAGCGCAGAGTGAGCGCAACATCCGAGTCA
GTGGCAGCGTCCGATATAACAGTGGTTATAGTTTGGTTGATGCTGCCTTAAAGGGTATTGGTATGGTTCAGTTGCCAGAT
TATTATGTCCAAAAATATCTTGATTCAGGGAAACTTATCAGTGTGCTCGATGACTTTCGAGAGCCTGAGGAGGGAATATG
GGCGGTGTATCCACAAAACCGGCACCTATCTACCAAGATGCAATTGCTGCTACAGTATTTGCAGCAGCATTTAAATGTAC
AATCTGGAGGCAAATAA

Upstream 100 bases:

>100_bases
ATTCGTTGTAAAAAAACGGGGTTGGAATAATGATGTGAATCATTATAGATTATCTCATATTAGATGATAATATGATGGTT
TGACAAATATCTTTTACATA

Downstream 100 bases:

>100_bases
GCGGGTTAGTTGGGCTTGCTATTGGCCGCTGACGCTTTGTTAACCAGGCTGTCTAAGCCGCTCACATGAATTTTACGCTG
CGGGAAGGGGATATCAATTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MVIMMKWEGISEFVYVAEYESFTRAAKELGISIAQVSRQVSALEKRLNIKLLYRTTRKISLTEEGQVFYKHCRGVLDGLD
AAEQAISSLQSKPQGKIKLTAPVTYGEQQLLPLINDFIVQYPDIKVTAFLSNQKLDLVEGGYDLAVRIGKLSDSTLMAKK
LGHRTNFVCAAPDYLDRYGTPQTLAELASHNCLLGSLDYWHFKQAQSERNIRVSGSVRYNSGYSLVDAALKGIGMVQLPD
YYVQKYLDSGKLISVLDDFREPEEGIWAVYPQNRHLSTKMQLLLQYLQQHLNVQSGGK

Sequences:

>Translated_298_residues
MVIMMKWEGISEFVYVAEYESFTRAAKELGISIAQVSRQVSALEKRLNIKLLYRTTRKISLTEEGQVFYKHCRGVLDGLD
AAEQAISSLQSKPQGKIKLTAPVTYGEQQLLPLINDFIVQYPDIKVTAFLSNQKLDLVEGGYDLAVRIGKLSDSTLMAKK
LGHRTNFVCAAPDYLDRYGTPQTLAELASHNCLLGSLDYWHFKQAQSERNIRVSGSVRYNSGYSLVDAALKGIGMVQLPD
YYVQKYLDSGKLISVLDDFREPEEGIWAVYPQNRHLSTKMQLLLQYLQQHLNVQSGGK
>Mature_298_residues
MVIMMKWEGISEFVYVAEYESFTRAAKELGISIAQVSRQVSALEKRLNIKLLYRTTRKISLTEEGQVFYKHCRGVLDGLD
AAEQAISSLQSKPQGKIKLTAPVTYGEQQLLPLINDFIVQYPDIKVTAFLSNQKLDLVEGGYDLAVRIGKLSDSTLMAKK
LGHRTNFVCAAPDYLDRYGTPQTLAELASHNCLLGSLDYWHFKQAQSERNIRVSGSVRYNSGYSLVDAALKGIGMVQLPD
YYVQKYLDSGKLISVLDDFREPEEGIWAVYPQNRHLSTKMQLLLQYLQQHLNVQSGGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=34.5762711864407, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=32.4137931034483, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1789440, Length=280, Percent_Identity=30.7142857142857, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI87081978, Length=284, Percent_Identity=29.2253521126761, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1787128, Length=297, Percent_Identity=29.96632996633, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=30.6122448979592, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=29.1095890410959, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1788706, Length=257, Percent_Identity=28.4046692607004, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1786448, Length=277, Percent_Identity=23.4657039711191, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789173, Length=248, Percent_Identity=25.4032258064516, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790011, Length=308, Percent_Identity=24.025974025974, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=34.1880341880342, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790783, Length=271, Percent_Identity=26.1992619926199, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=282, Percent_Identity=23.758865248227, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=126, Percent_Identity=29.3650793650794, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33610; Mature: 33610

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIMMKWEGISEFVYVAEYESFTRAAKELGISIAQVSRQVSALEKRLNIKLLYRTTRKIS
CEEEEEECCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEECCEEE
LTEEGQVFYKHCRGVLDGLDAAEQAISSLQSKPQGKIKLTAPVTYGEQQLLPLINDFIVQ
ECCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
YPDIKVTAFLSNQKLDLVEGGYDLAVRIGKLSDSTLMAKKLGHRTNFVCAAPDYLDRYGT
CCCEEEEEEECCCCEEEEECCCEEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHCCC
PQTLAELASHNCLLGSLDYWHFKQAQSERNIRVSGSVRYNSGYSLVDAALKGIGMVQLPD
HHHHHHHHHCCCEEECCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCCCEEECCH
YYVQKYLDSGKLISVLDDFREPEEGIWAVYPQNRHLSTKMQLLLQYLQQHLNVQSGGK
HHHHHHHCCCCEEHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVIMMKWEGISEFVYVAEYESFTRAAKELGISIAQVSRQVSALEKRLNIKLLYRTTRKIS
CEEEEEECCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEECCEEE
LTEEGQVFYKHCRGVLDGLDAAEQAISSLQSKPQGKIKLTAPVTYGEQQLLPLINDFIVQ
ECCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
YPDIKVTAFLSNQKLDLVEGGYDLAVRIGKLSDSTLMAKKLGHRTNFVCAAPDYLDRYGT
CCCEEEEEEECCCCEEEEECCCEEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHCCC
PQTLAELASHNCLLGSLDYWHFKQAQSERNIRVSGSVRYNSGYSLVDAALKGIGMVQLPD
HHHHHHHHHCCCEEECCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCCCEEECCH
YYVQKYLDSGKLISVLDDFREPEEGIWAVYPQNRHLSTKMQLLLQYLQQHLNVQSGGK
HHHHHHHCCCCEEHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]