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The map label for this gene is ycdC [C]

Identifier: 148652701

GI number: 148652701

Start: 1062950

End: 1063597

Strand: Direct

Name: ycdC [C]

Synonym: PsycPRwf_0894

Alternate gene names: 148652701

Gene position: 1062950-1063597 (Clockwise)

Preceding gene: 148652700

Following gene: 148652708

Centisome position: 35.68

GC content: 42.28

Gene sequence:

>648_bases
ATGAATTCAAAAGTAAGCTGTGCTCCGCAAAAACGCTCAGAGCAAAAGCGTTCACGTGAGACCAAATGCAAAATCATTAA
AGCGGCACTTGCTGAGTTTGCGTCTGCTGGGTTTGAGGGTGTATCAACCCGTGCCATTGCCAGTAGAGCGGGAGTGAATC
ATACGTTAATCACTCATCACTTCGGCACCAAAGAAGATCTGTGGAAAGCGGCAGCTGCTGCTATATTTGACACTTATCTA
AGCGAGTCAGAAAAGTACCGACAAAGCCTTGGCCATCTTGAGCAAATTGAAGTGGTTCGAGAATTACTCAAGCATTATAT
TAACTTTAGTGCAGAATTCCCGGACTTTCATCGCTTTATGATTCAAGCCAATCATGGCGACTCTGAGTTATTAAATTGGT
TCACTGATGAATATATCAGTCCTTATGCCGACTCTGAGTTAGATCTATTACAGCAGGCTCAAAAACTGGGCTTAATGCCA
GAAGGGGATAGCTTGCACGTTCGATACTTATTTATAGGGGCAGTAAATTCTATATTCACCTTTGCCCCACAATTTAAGAG
ATTATCAGCAACAGACCCTTTTTCTAAGCAAGTAGTAGAGCGCCATGTGGAGTATGTGCTGTCACTATTTTCTGGAAAAA
AGTTGTAA

Upstream 100 bases:

>100_bases
TGAGGTTTAAAGGGATAAGAGGATAGAGCAATCTGGGTGATTTTCATCCGTTTTTATTTGCTAACCTGCTGTCCACTTAT
CGCTTGGAGGTGAAGTGACC

Downstream 100 bases:

>100_bases
ATAACGGCGATGCAGCTATTCTACAAGCCTTTAAGCCACAGCGCTTATCCATTTTTTGCAAATAAAATCAACCCTATCAT
AATAACGGCTATACCTGTAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; TetR-Family Transcriptional Regulator; Transcriptional Regulator TetR Family

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNSKVSCAPQKRSEQKRSRETKCKIIKAALAEFASAGFEGVSTRAIASRAGVNHTLITHHFGTKEDLWKAAAAAIFDTYL
SESEKYRQSLGHLEQIEVVRELLKHYINFSAEFPDFHRFMIQANHGDSELLNWFTDEYISPYADSELDLLQQAQKLGLMP
EGDSLHVRYLFIGAVNSIFTFAPQFKRLSATDPFSKQVVERHVEYVLSLFSGKKL

Sequences:

>Translated_215_residues
MNSKVSCAPQKRSEQKRSRETKCKIIKAALAEFASAGFEGVSTRAIASRAGVNHTLITHHFGTKEDLWKAAAAAIFDTYL
SESEKYRQSLGHLEQIEVVRELLKHYINFSAEFPDFHRFMIQANHGDSELLNWFTDEYISPYADSELDLLQQAQKLGLMP
EGDSLHVRYLFIGAVNSIFTFAPQFKRLSATDPFSKQVVERHVEYVLSLFSGKKL
>Mature_215_residues
MNSKVSCAPQKRSEQKRSRETKCKIIKAALAEFASAGFEGVSTRAIASRAGVNHTLITHHFGTKEDLWKAAAAAIFDTYL
SESEKYRQSLGHLEQIEVVRELLKHYINFSAEFPDFHRFMIQANHGDSELLNWFTDEYISPYADSELDLLQQAQKLGLMP
EGDSLHVRYLFIGAVNSIFTFAPQFKRLSATDPFSKQVVERHVEYVLSLFSGKKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787249, Length=197, Percent_Identity=26.3959390862944, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24421; Mature: 24421

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKVSCAPQKRSEQKRSRETKCKIIKAALAEFASAGFEGVSTRAIASRAGVNHTLITHH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEC
FGTKEDLWKAAAAAIFDTYLSESEKYRQSLGHLEQIEVVRELLKHYINFSAEFPDFHRFM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IQANHGDSELLNWFTDEYISPYADSELDLLQQAQKLGLMPEGDSLHVRYLFIGAVNSIFT
HCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHH
FAPQFKRLSATDPFSKQVVERHVEYVLSLFSGKKL
HCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNSKVSCAPQKRSEQKRSRETKCKIIKAALAEFASAGFEGVSTRAIASRAGVNHTLITHH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEC
FGTKEDLWKAAAAAIFDTYLSESEKYRQSLGHLEQIEVVRELLKHYINFSAEFPDFHRFM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IQANHGDSELLNWFTDEYISPYADSELDLLQQAQKLGLMPEGDSLHVRYLFIGAVNSIFT
HCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHH
FAPQFKRLSATDPFSKQVVERHVEYVLSLFSGKKL
HCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA