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The map label for this gene is cspA [H]

Identifier: 148652578

GI number: 148652578

Start: 919461

End: 919676

Strand: Direct

Name: cspA [H]

Synonym: PsycPRwf_0769

Alternate gene names: 148652578

Gene position: 919461-919676 (Clockwise)

Preceding gene: 148652575

Following gene: 148652579

Centisome position: 30.87

GC content: 41.67

Gene sequence:

>216_bases
ATGTCAGCTCGTGAGCAAGGTACTGTTAAGTGGTTTAATGATGCAAAAGGCTTTGGCTTTATTCAACGTGAAAGCGGTGA
AGATATCTTCGTTCATTTCCGCGCTATCCAAGGTGACGGCTACCGTTCACTTCAAGACGGCCAAAAAGTTGAATTTATCG
TAACTGAAGGTGAAAAAGGCTTACAAGCTGAAGAAGTTACTAAAGTAGACGCTTAA

Upstream 100 bases:

>100_bases
GCCACTTCTTATACCCAGTGTTAGCATTTCAGGCTTCAGCTTATATGCTTTAATTGGGGTTAAATTGAAGTTTTGTTAAT
TAAGTTTTAGGAAGTAGATT

Downstream 100 bases:

>100_bases
TTCAAATGCCGATGAAGCGTTTGTGAGATTAAGCTGGCAAGCCCCACTTTTATCAAATGCTTTCCCGCTTTTATCAAACG
CTTTATAGTTAGACAGCCAA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MSAREQGTVKWFNDAKGFGFIQRESGEDIFVHFRAIQGDGYRSLQDGQKVEFIVTEGEKGLQAEEVTKVDA

Sequences:

>Translated_71_residues
MSAREQGTVKWFNDAKGFGFIQRESGEDIFVHFRAIQGDGYRSLQDGQKVEFIVTEGEKGLQAEEVTKVDA
>Mature_70_residues
SAREQGTVKWFNDAKGFGFIQRESGEDIFVHFRAIQGDGYRSLQDGQKVEFIVTEGEKGLQAEEVTKVDA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586884, Length=69, Percent_Identity=52.1739130434783, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI224586882, Length=69, Percent_Identity=52.1739130434783, Blast_Score=65, Evalue=8e-12,
Organism=Homo sapiens, GI156415990, Length=66, Percent_Identity=53.030303030303, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=53.030303030303, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=55.7142857142857, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=58.2089552238806, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1788126, Length=68, Percent_Identity=52.9411764705882, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=53.8461538461538, Blast_Score=76, Evalue=3e-16,
Organism=Escherichia coli, GI1787839, Length=71, Percent_Identity=53.5211267605634, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=48.5714285714286, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=47.1428571428571, Blast_Score=69, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17533635, Length=70, Percent_Identity=50, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7983; Mature: 7852

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAREQGTVKWFNDAKGFGFIQRESGEDIFVHFRAIQGDGYRSLQDGQKVEFIVTEGEKG
CCCCCCCCEEEECCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCC
LQAEEVTKVDA
CCCCCEEECCC
>Mature Secondary Structure 
SAREQGTVKWFNDAKGFGFIQRESGEDIFVHFRAIQGDGYRSLQDGQKVEFIVTEGEKG
CCCCCCCEEEECCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCC
LQAEEVTKVDA
CCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]