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The map label for this gene is tsf

Identifier: 148652371

GI number: 148652371

Start: 670033

End: 670911

Strand: Direct

Name: tsf

Synonym: PsycPRwf_0559

Alternate gene names: 148652371

Gene position: 670033-670911 (Clockwise)

Preceding gene: 148652370

Following gene: 148652372

Centisome position: 22.49

GC content: 45.16

Gene sequence:

>879_bases
ATGTCTAAGATTTCTGCTAAATTAGTAAAAGAGCTTCGTGACCGTACTGGCCTTGGCATGATGGAATGTAAAAAAGCGCT
AGAAGAAACAAATGGTGATGTTGAGCAAGCGATCGACAACCTACGTAAATCAGGTCAAGCAAAAGCGGCTAAAAAAGCAG
GTAACATTGCCGCTGACGGCGCTATCGTAATCGCTCAAGAAGGCAACAAAGCTATCTTACTAGAAGTTAACTGCCAAACT
GACTTCGTCGCTAAAGATGACAACTTCACTGAATTTGCTAATAAAGTAGCTGAATTAGCCCTAGCTAACAACACCACTGA
TGTTGCCGCTATCTCTGAGCTTGACTACGGCAATGGCCAAAGCGTTGAAGAAGCTCGCGTTGCTTTGGTTCAAAAAATCG
GTGAAAACATCCAAGTACGCCGTGCAAAAATCATCGAAGGTGACAACCTAGCGTCTTACCGTCATGGTCTACGTATCGGT
GTGGTTGTATCAAGCGAAGGCGGTCAAGAAGACAGCGGCAAAAACTTAGCGATGCACATCGCAGCATTCAACCCAGTAGC
CGTTAACGACACTGACGTTCCAGCTGATATCCTAGCTCGTGAAAAAGACATCGCTGAAGCCAAAGCTCGTGAATCTGGTA
AACCTGACAACATCATCGAAAAAATGATCGAAGGTGGCCTACGTAAGTACCTAGACGAAGTTGTATTGGTTCGTCAAGCT
TACGTCATGGACAACGAGAAGAAAGTAGGTGATGTACTTAAAGCTGACGGCGTAACGGTTAAAGACTTCGTACGCTTTGA
AGTTGGTGAAGGTATCGAGAAAAAACAAGAAGACTTCGCTGCTGAAGTTGCTGCTGCCCAGGCTGCTGCTGCTCAATAA

Upstream 100 bases:

>100_bases
ATGTGGAAACCCTCGTCATGCCCTTGTCATTTTATAAACTTACACTGCTTATTTATATTATAATTTTATACACCATAACT
ACTCAAATAGAGGAAAAAAT

Downstream 100 bases:

>100_bases
GCGCATGAATATAAACAATCAGATGTTTGATTGTTTTGCTTCAAGAAAGTCCATCACGTTGTGATGGGCTTTTTTTGTTT
TTGTCTAAAAATAAGCGCAC

Product: elongation factor Ts

Products: NA

Alternate protein names: EF-Ts

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSKISAKLVKELRDRTGLGMMECKKALEETNGDVEQAIDNLRKSGQAKAAKKAGNIAADGAIVIAQEGNKAILLEVNCQT
DFVAKDDNFTEFANKVAELALANNTTDVAAISELDYGNGQSVEEARVALVQKIGENIQVRRAKIIEGDNLASYRHGLRIG
VVVSSEGGQEDSGKNLAMHIAAFNPVAVNDTDVPADILAREKDIAEAKARESGKPDNIIEKMIEGGLRKYLDEVVLVRQA
YVMDNEKKVGDVLKADGVTVKDFVRFEVGEGIEKKQEDFAAEVAAAQAAAAQ

Sequences:

>Translated_292_residues
MSKISAKLVKELRDRTGLGMMECKKALEETNGDVEQAIDNLRKSGQAKAAKKAGNIAADGAIVIAQEGNKAILLEVNCQT
DFVAKDDNFTEFANKVAELALANNTTDVAAISELDYGNGQSVEEARVALVQKIGENIQVRRAKIIEGDNLASYRHGLRIG
VVVSSEGGQEDSGKNLAMHIAAFNPVAVNDTDVPADILAREKDIAEAKARESGKPDNIIEKMIEGGLRKYLDEVVLVRQA
YVMDNEKKVGDVLKADGVTVKDFVRFEVGEGIEKKQEDFAAEVAAAQAAAAQ
>Mature_291_residues
SKISAKLVKELRDRTGLGMMECKKALEETNGDVEQAIDNLRKSGQAKAAKKAGNIAADGAIVIAQEGNKAILLEVNCQTD
FVAKDDNFTEFANKVAELALANNTTDVAAISELDYGNGQSVEEARVALVQKIGENIQVRRAKIIEGDNLASYRHGLRIGV
VVSSEGGQEDSGKNLAMHIAAFNPVAVNDTDVPADILAREKDIAEAKARESGKPDNIIEKMIEGGLRKYLDEVVLVRQAY
VMDNEKKVGDVLKADGVTVKDFVRFEVGEGIEKKQEDFAAEVAAAQAAAAQ

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family

Homologues:

Organism=Homo sapiens, GI171846268, Length=301, Percent_Identity=28.2392026578073, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI291084500, Length=325, Percent_Identity=27.0769230769231, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI291084502, Length=97, Percent_Identity=43.298969072165, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI291084498, Length=97, Percent_Identity=43.298969072165, Blast_Score=79, Evalue=5e-15,
Organism=Escherichia coli, GI1786366, Length=285, Percent_Identity=54.3859649122807, Blast_Score=293, Evalue=6e-81,
Organism=Caenorhabditis elegans, GI17561440, Length=304, Percent_Identity=25.3289473684211, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI19921466, Length=285, Percent_Identity=29.1228070175439, Blast_Score=104, Evalue=5e-23,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): EFTS_PSYWF (A5WCX3)

Other databases:

- EMBL:   CP000713
- RefSeq:   YP_001279464.1
- ProteinModelPortal:   A5WCX3
- SMR:   A5WCX3
- STRING:   A5WCX3
- GeneID:   5205140
- GenomeReviews:   CP000713_GR
- KEGG:   prw:PsycPRwf_0559
- eggNOG:   COG0264
- HOGENOM:   HBG713289
- OMA:   YLHGTRI
- ProtClustDB:   PRK09377
- BioCyc:   PSP56811:PSYCPRWF_0559-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00050
- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449
- Gene3D:   G3DSA:3.30.479.20
- PANTHER:   PTHR11741
- TIGRFAMs:   TIGR00116

Pfam domain/function: PF00889 EF_TS; PF00627 UBA; SSF54713 EF_TS; SSF46934 UBA_like

EC number: NA

Molecular weight: Translated: 31372; Mature: 31241

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS01126 EF_TS_1; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKISAKLVKELRDRTGLGMMECKKALEETNGDVEQAIDNLRKSGQAKAAKKAGNIAADG
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHCCCEECCC
AIVIAQEGNKAILLEVNCQTDFVAKDDNFTEFANKVAELALANNTTDVAAISELDYGNGQ
EEEEEECCCEEEEEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCC
SVEEARVALVQKIGENIQVRRAKIIEGDNLASYRHGLRIGVVVSSEGGQEDSGKNLAMHI
CHHHHHHHHHHHHCCCCEEEHHEEECCCCHHHHHCCCEEEEEEECCCCCCCCCCCEEEEE
AAFNPVAVNDTDVPADILAREKDIAEAKARESGKPDNIIEKMIEGGLRKYLDEVVLVRQA
EECCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YVMDNEKKVGDVLKADGVTVKDFVRFEVGEGIEKKQEDFAAEVAAAQAAAAQ
HHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKISAKLVKELRDRTGLGMMECKKALEETNGDVEQAIDNLRKSGQAKAAKKAGNIAADG
CHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHCCCEECCC
AIVIAQEGNKAILLEVNCQTDFVAKDDNFTEFANKVAELALANNTTDVAAISELDYGNGQ
EEEEEECCCEEEEEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCC
SVEEARVALVQKIGENIQVRRAKIIEGDNLASYRHGLRIGVVVSSEGGQEDSGKNLAMHI
CHHHHHHHHHHHHCCCCEEEHHEEECCCCHHHHHCCCEEEEEEECCCCCCCCCCCEEEEE
AAFNPVAVNDTDVPADILAREKDIAEAKARESGKPDNIIEKMIEGGLRKYLDEVVLVRQA
EECCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YVMDNEKKVGDVLKADGVTVKDFVRFEVGEGIEKKQEDFAAEVAAAQAAAAQ
HHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA