Click here to switch to the map view.

The map label for this gene is yjeK [H]

Identifier: 148652299

GI number: 148652299

Start: 580550

End: 581668

Strand: Direct

Name: yjeK [H]

Synonym: PsycPRwf_0487

Alternate gene names: 148652299

Gene position: 580550-581668 (Clockwise)

Preceding gene: 148652295

Following gene: 148652300

Centisome position: 19.49

GC content: 45.84

Gene sequence:

>1119_bases
ATGATAAACCATTTACCCCAACAAAAAAACAAGCAAATCCCTATTACCTCAGTCGCTGTTGGTACCTGTGCACCAAAGGC
GGGTGAGTCGTTGCAGGTTATTGAAGATAGTAATGAGGCTATCGACTGGCAAACACAGGTTGCAGATGTTATTACAGATA
TCGATCAGTTGCTAGCTATTTTGGAATTAAGCCATATTAAAGATGAGCTGTATGTACCGCAGGGCTTTGGTTTGCGGGTA
CCTAAGGCGTTTGTGGCAAAGATGAAAAAAGGCGATGCAAATGACCCGTTATTGCTACAGGTATTGCCCAATAAGCAAGA
GCAGACACAGGTTACCGGTTATGTCAGTGATCCACTGGCCGAGAATGCGCATAATCCAATTAAAGGATTGTTACATAAAT
ACCGCTCTCGGGTATTGGTGACCGTCACTGGGGCCTGCGCCATTCACTGCCGCTACTGCTTTCGCCAGCATTTTGATTAT
CAAGCCAATTTGCCAAAGTCAGATCAGTTACGCTTAATACAAGACTATATCAGGCAGCACCCTGAGATTAATGAGGTCAT
ATTAAGTGGCGGTGATCCGTTAAGCGTGACCAATCGACGCCTGTTTTTGTGGCTACAAGCTTTAGAGGATTTGCCGCAGA
TTAATACCATACGTCTGCACACTCGGCTGTCGATAGTCATTCCAGATCGGCTAGATAATGAGCTGCTTGATCGACTCGAG
CACAGCCGCTGCCGTATCGTAATGGTGGTACATACCAACCATGCCAACGAAATTGACAATCATACAGCAAAATTGCTACA
GCACGCCCGCCAAAAAGGGATTACGCTACTCAACCAAACTGTGCTATTGGCTGGGGTTAATGATGGGCTTAAGCAGCAAG
TGGCTTTAAGTGAGCGGTTATTTGAGGCTGGCGTGCTGCCTTATTATCTACACCTGTTGGATAAAGTGGCTGGCGCTGCG
CATTTTGATATCGCCCAAAAGCAGGCCATTGACCTATATTGGCAAATGCTGGCTCATTTGCCAGGTTATCTGGTACCCAA
ATTGGTACAAGAGCTACCACACAAGCCCTTTAAAACCCCTGTGGACTTATATCACAGTGACTCTGCCCATCTATTTTAA

Upstream 100 bases:

>100_bases
CTTTAAGACCGGCTTTAAATTCGTTAGTTGAAAAACTTGCCACAATATTGCTCCTGATACTTTTCAAATTAATGACAAAA
AATCACACATAATGAGTCCC

Downstream 100 bases:

>100_bases
GAGAGCTTTTCATGTCTTTATGTGTTCATTCATCAGCGGGTGCTAAGCGCCTAGCGAGTGCTTTTGGTATTAAAAAATCA
GTGGCTTTATTGGCGATGGC

Product: lysine 2,3-aminomutase YodO family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MINHLPQQKNKQIPITSVAVGTCAPKAGESLQVIEDSNEAIDWQTQVADVITDIDQLLAILELSHIKDELYVPQGFGLRV
PKAFVAKMKKGDANDPLLLQVLPNKQEQTQVTGYVSDPLAENAHNPIKGLLHKYRSRVLVTVTGACAIHCRYCFRQHFDY
QANLPKSDQLRLIQDYIRQHPEINEVILSGGDPLSVTNRRLFLWLQALEDLPQINTIRLHTRLSIVIPDRLDNELLDRLE
HSRCRIVMVVHTNHANEIDNHTAKLLQHARQKGITLLNQTVLLAGVNDGLKQQVALSERLFEAGVLPYYLHLLDKVAGAA
HFDIAQKQAIDLYWQMLAHLPGYLVPKLVQELPHKPFKTPVDLYHSDSAHLF

Sequences:

>Translated_372_residues
MINHLPQQKNKQIPITSVAVGTCAPKAGESLQVIEDSNEAIDWQTQVADVITDIDQLLAILELSHIKDELYVPQGFGLRV
PKAFVAKMKKGDANDPLLLQVLPNKQEQTQVTGYVSDPLAENAHNPIKGLLHKYRSRVLVTVTGACAIHCRYCFRQHFDY
QANLPKSDQLRLIQDYIRQHPEINEVILSGGDPLSVTNRRLFLWLQALEDLPQINTIRLHTRLSIVIPDRLDNELLDRLE
HSRCRIVMVVHTNHANEIDNHTAKLLQHARQKGITLLNQTVLLAGVNDGLKQQVALSERLFEAGVLPYYLHLLDKVAGAA
HFDIAQKQAIDLYWQMLAHLPGYLVPKLVQELPHKPFKTPVDLYHSDSAHLF
>Mature_372_residues
MINHLPQQKNKQIPITSVAVGTCAPKAGESLQVIEDSNEAIDWQTQVADVITDIDQLLAILELSHIKDELYVPQGFGLRV
PKAFVAKMKKGDANDPLLLQVLPNKQEQTQVTGYVSDPLAENAHNPIKGLLHKYRSRVLVTVTGACAIHCRYCFRQHFDY
QANLPKSDQLRLIQDYIRQHPEINEVILSGGDPLSVTNRRLFLWLQALEDLPQINTIRLHTRLSIVIPDRLDNELLDRLE
HSRCRIVMVVHTNHANEIDNHTAKLLQHARQKGITLLNQTVLLAGVNDGLKQQVALSERLFEAGVLPYYLHLLDKVAGAA
HFDIAQKQAIDLYWQMLAHLPGYLVPKLVQELPHKPFKTPVDLYHSDSAHLF

Specific function: With YjeA might be involved in the post-translational modification of elongation factor P (EF-P) [H]

COG id: COG1509

COG function: function code E; Lysine 2,3-aminomutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the KamA family [H]

Homologues:

Organism=Escherichia coli, GI1790589, Length=326, Percent_Identity=45.0920245398773, Blast_Score=289, Evalue=2e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003739
- InterPro:   IPR022462
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 42088; Mature: 42088

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINHLPQQKNKQIPITSVAVGTCAPKAGESLQVIEDSNEAIDWQTQVADVITDIDQLLAI
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
LELSHIKDELYVPQGFGLRVPKAFVAKMKKGDANDPLLLQVLPNKQEQTQVTGYVSDPLA
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHEEEEEECCCHH
ENAHNPIKGLLHKYRSRVLVTVTGACAIHCRYCFRQHFDYQANLPKSDQLRLIQDYIRQH
HCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
PEINEVILSGGDPLSVTNRRLFLWLQALEDLPQINTIRLHTRLSIVIPDRLDNELLDRLE
CCHHHEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHHC
HSRCRIVMVVHTNHANEIDNHTAKLLQHARQKGITLLNQTVLLAGVNDGLKQQVALSERL
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHCCEEEEEECCCHHHHHHHHHHHH
FEAGVLPYYLHLLDKVAGAAHFDIAQKQAIDLYWQMLAHLPGYLVPKLVQELPHKPFKTP
HHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
VDLYHSDSAHLF
HHHEECCCCCCC
>Mature Secondary Structure
MINHLPQQKNKQIPITSVAVGTCAPKAGESLQVIEDSNEAIDWQTQVADVITDIDQLLAI
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
LELSHIKDELYVPQGFGLRVPKAFVAKMKKGDANDPLLLQVLPNKQEQTQVTGYVSDPLA
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHEEEEEECCCHH
ENAHNPIKGLLHKYRSRVLVTVTGACAIHCRYCFRQHFDYQANLPKSDQLRLIQDYIRQH
HCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
PEINEVILSGGDPLSVTNRRLFLWLQALEDLPQINTIRLHTRLSIVIPDRLDNELLDRLE
CCHHHEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHHC
HSRCRIVMVVHTNHANEIDNHTAKLLQHARQKGITLLNQTVLLAGVNDGLKQQVALSERL
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHCCEEEEEECCCHHHHHHHHHHHH
FEAGVLPYYLHLLDKVAGAAHFDIAQKQAIDLYWQMLAHLPGYLVPKLVQELPHKPFKTP
HHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
VDLYHSDSAHLF
HHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]