| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
Click here to switch to the map view.
The map label for this gene is yedI [H]
Identifier: 148652290
GI number: 148652290
Start: 568093
End: 569010
Strand: Direct
Name: yedI [H]
Synonym: PsycPRwf_0478
Alternate gene names: 148652290
Gene position: 568093-569010 (Clockwise)
Preceding gene: 148652287
Following gene: 148652292
Centisome position: 19.07
GC content: 46.3
Gene sequence:
>918_bases ATGGCAGGTGGTAGCTTACTAATGCTGCTCGATGATATTAGCGTGATTATGGATGATGTCTCGGTAATGACCAAAGTGGC GGCCAAAAAGACCGTCGGCGTGCTGGGGGATGATCTTGCGCTAAATGCTGAGCAGGTAAGCGGGGTCAAGCCTAGCCGTG AGCTCCCTGTGGTCTGGGCAGTAGCAAAAGGCTCCATGATAAATAAGTTTATCTTGGTACCTGCCGCGCTTCTTATCAGC TACTTTGTGCCGTGGCTTATCACGCCTTTACTTATGGTGGGTGGCTTGTTCTTATGTTACGAGGGTGCCGAAAAGGTTAT TCATAAATTTTGGCCAAAGCTGTTGCCCCATGATGAAGAGCAGCAGGCGCGCATCCATGCCAATGCAGATGACACTGTGG ACTTGGTTGCGCTTGAGAAGCAGAAAGTAAAAGGTGCCATTCGAACTGATTTTATCTTATCGGCTGAAATTGTGGTGATT GGCTTAGGGACGTTAAGTGCCGCCAATTTATTAGACAAAGCGATTGTGCTGTCTGTTCTAGCCATTGGGGTTACCATTGG TATTTATGGCCTAGTGGCAGGTATTGTTAAGATTGATGACTTGGGGCTGCACATGATGCAAAGACCAGGTGCAAGTAAGA TAACCCAAAAAATCGGTGAATTCTTATTGTCAGCGGCTCCCAAGCTTATGAAGTTTTTGACCATCGTAGGCACTATTGCC ATGTTCTTAGTCGGTGGTGGCATCATCGTACATGGTATCGGTTATCTACACCATGCGGTAGAGGACATTGCACACTTATC TGGTGTATTTGAAGGGTTATCTACCAATCTATTAAATGGTGCCATAGGTTTTGTCATTGGGGTGGTGCTGTTATTTATAT TAACTGCCATCTCAAAAATGCGCGGTGACGCCCACTAA
Upstream 100 bases:
>100_bases GTAAGGCGCGTTAGAGGCTTTTATGAGCTTTATGGCTGAGTAAGTAGAGGCAATAAGGATTTAAATACATCATAACATAG GTAATAACTAAGGAGATTTT
Downstream 100 bases:
>100_bases GATTATCATCAAGACGCCAGCTCTAAACCAAAAACAAGACTCAACAAAAAGGCCACTTAATTTATTAAGTGGCCTTTTTG TTATTAGGATGATGAAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MAGGSLLMLLDDISVIMDDVSVMTKVAAKKTVGVLGDDLALNAEQVSGVKPSRELPVVWAVAKGSMINKFILVPAALLIS YFVPWLITPLLMVGGLFLCYEGAEKVIHKFWPKLLPHDEEQQARIHANADDTVDLVALEKQKVKGAIRTDFILSAEIVVI GLGTLSAANLLDKAIVLSVLAIGVTIGIYGLVAGIVKIDDLGLHMMQRPGASKITQKIGEFLLSAAPKLMKFLTIVGTIA MFLVGGGIIVHGIGYLHHAVEDIAHLSGVFEGLSTNLLNGAIGFVIGVVLLFILTAISKMRGDAH
Sequences:
>Translated_305_residues MAGGSLLMLLDDISVIMDDVSVMTKVAAKKTVGVLGDDLALNAEQVSGVKPSRELPVVWAVAKGSMINKFILVPAALLIS YFVPWLITPLLMVGGLFLCYEGAEKVIHKFWPKLLPHDEEQQARIHANADDTVDLVALEKQKVKGAIRTDFILSAEIVVI GLGTLSAANLLDKAIVLSVLAIGVTIGIYGLVAGIVKIDDLGLHMMQRPGASKITQKIGEFLLSAAPKLMKFLTIVGTIA MFLVGGGIIVHGIGYLHHAVEDIAHLSGVFEGLSTNLLNGAIGFVIGVVLLFILTAISKMRGDAH >Mature_304_residues AGGSLLMLLDDISVIMDDVSVMTKVAAKKTVGVLGDDLALNAEQVSGVKPSRELPVVWAVAKGSMINKFILVPAALLISY FVPWLITPLLMVGGLFLCYEGAEKVIHKFWPKLLPHDEEQQARIHANADDTVDLVALEKQKVKGAIRTDFILSAEIVVIG LGTLSAANLLDKAIVLSVLAIGVTIGIYGLVAGIVKIDDLGLHMMQRPGASKITQKIGEFLLSAAPKLMKFLTIVGTIAM FLVGGGIIVHGIGYLHHAVEDIAHLSGVFEGLSTNLLNGAIGFVIGVVLLFILTAISKMRGDAH
Specific function: Unknown
COG id: COG2354
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788268, Length=307, Percent_Identity=57.6547231270358, Blast_Score=322, Evalue=2e-89,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008526 [H]
Pfam domain/function: PF05661 DUF808 [H]
EC number: NA
Molecular weight: Translated: 32387; Mature: 32256
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGGSLLMLLDDISVIMDDVSVMTKVAAKKTVGVLGDDLALNAEQVSGVKPSRELPVVWA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEE VAKGSMINKFILVPAALLISYFVPWLITPLLMVGGLFLCYEGAEKVIHKFWPKLLPHDEE ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC QQARIHANADDTVDLVALEKQKVKGAIRTDFILSAEIVVIGLGTLSAANLLDKAIVLSVL CHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHEECCEEEEECCHHHHHHHHHHHHHHHHH AIGVTIGIYGLVAGIVKIDDLGLHMMQRPGASKITQKIGEFLLSAAPKLMKFLTIVGTIA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MFLVGGGIIVHGIGYLHHAVEDIAHLSGVFEGLSTNLLNGAIGFVIGVVLLFILTAISKM HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGDAH CCCCC >Mature Secondary Structure AGGSLLMLLDDISVIMDDVSVMTKVAAKKTVGVLGDDLALNAEQVSGVKPSRELPVVWA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEE VAKGSMINKFILVPAALLISYFVPWLITPLLMVGGLFLCYEGAEKVIHKFWPKLLPHDEE ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC QQARIHANADDTVDLVALEKQKVKGAIRTDFILSAEIVVIGLGTLSAANLLDKAIVLSVL CHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHEECCEEEEECCHHHHHHHHHHHHHHHHH AIGVTIGIYGLVAGIVKIDDLGLHMMQRPGASKITQKIGEFLLSAAPKLMKFLTIVGTIA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MFLVGGGIIVHGIGYLHHAVEDIAHLSGVFEGLSTNLLNGAIGFVIGVVLLFILTAISKM HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGDAH CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 2527357; 7567469 [H]