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The map label for this gene is yoaB [C]

Identifier: 148652287

GI number: 148652287

Start: 564725

End: 565063

Strand: Direct

Name: yoaB [C]

Synonym: PsycPRwf_0475

Alternate gene names: 148652287

Gene position: 564725-565063 (Clockwise)

Preceding gene: 148652286

Following gene: 148652290

Centisome position: 18.96

GC content: 45.13

Gene sequence:

>339_bases
ATGCAAAAATTACACAGCAACCAGCGCATGAGCAAAATTGTTATTCATAACGAGACCATCTACTTATGTGGACAAGTAGG
TAACGCTGAGGATGATATCTCCGCACAAACCTTAACCTGTTTAGAGAAGATTAAAGCACTACTAGAAGAAGTGGGCAGCG
ACAAATCAAAAATCTTATCTACCACAGTTTGGCTAAAAGACATGGCTGACTTTGCGGCGATGAATGCGGTATGGGATGAG
TGGTTTAGCGATGTGTTGCCACCAGCTCGTGCTTGTGGCCAAGCGGCTTTAGCCCGTCCTGAGCTATTGGTCGAGATGAT
TGTCACTGCTGCCGTTTAA

Upstream 100 bases:

>100_bases
TAAGCTGGCAGAGGGAGCCTCTCTTTGTCAGCTTATTGCCCTTTTTTAGTGATGTTGTTCAAGTTTTATAGATTAATTAA
CCCTAGGTGACCCTTTATTT

Downstream 100 bases:

>100_bases
AGGTACTGAAGGTATCAAATAGCCATAAAAAAAGACAGCCAATTGGCTGTCTTTTTTTATGGGCGATTATGGGCGATGAC
TTAGAGGGGGTTGCTCACAG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MQKLHSNQRMSKIVIHNETIYLCGQVGNAEDDISAQTLTCLEKIKALLEEVGSDKSKILSTTVWLKDMADFAAMNAVWDE
WFSDVLPPARACGQAALARPELLVEMIVTAAV

Sequences:

>Translated_112_residues
MQKLHSNQRMSKIVIHNETIYLCGQVGNAEDDISAQTLTCLEKIKALLEEVGSDKSKILSTTVWLKDMADFAAMNAVWDE
WFSDVLPPARACGQAALARPELLVEMIVTAAV
>Mature_112_residues
MQKLHSNQRMSKIVIHNETIYLCGQVGNAEDDISAQTLTCLEKIKALLEEVGSDKSKILSTTVWLKDMADFAAMNAVWDE
WFSDVLPPARACGQAALARPELLVEMIVTAAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=110, Percent_Identity=42.7272727272727, Blast_Score=89, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12348; Mature: 12348

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKLHSNQRMSKIVIHNETIYLCGQVGNAEDDISAQTLTCLEKIKALLEEVGSDKSKILS
CCCCCCHHHHHHHEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TTVWLKDMADFAAMNAVWDEWFSDVLPPARACGQAALARPELLVEMIVTAAV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MQKLHSNQRMSKIVIHNETIYLCGQVGNAEDDISAQTLTCLEKIKALLEEVGSDKSKILS
CCCCCCHHHHHHHEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TTVWLKDMADFAAMNAVWDEWFSDVLPPARACGQAALARPELLVEMIVTAAV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]