| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is topA [H]
Identifier: 148652205
GI number: 148652205
Start: 474310
End: 476964
Strand: Direct
Name: topA [H]
Synonym: PsycPRwf_0393
Alternate gene names: 148652205
Gene position: 474310-476964 (Clockwise)
Preceding gene: 148652204
Following gene: 148652208
Centisome position: 15.92
GC content: 48.02
Gene sequence:
>2655_bases ATGGCTAAAACCACAGCTAAAAAAACAACCTCGACCCCCGCGGCCAGTGCAAAAGGCAAATCACTGGTCATTGTGGAGTC TCCTGCCAAAGCAAAAACCATCAACAAATATTTGGGTGATGACTTTATTGTACGCTCAAGTATTGGTCATGTGCGTGACT TGCCCACCAGCAGTGGCGTTAAGAAAAAAGCAACCAAGACGGATGAAAAGCTAAGCAAAGAAGACAAAGCGCAGCAGGCT TTGGTACGTAGAATGGGTATTGACCCTGAGCACGGCTGGAAAGCTGTGTATGAAGTGCTGCCTAATAAAACCAAAGTGAT TAAAGAGCTTAAAGCCTTGGCCAAAGATGCCGATAAGATTTATCTGGCAACGGATTTGGATAGAGAAGGGGAAGCGATTG CTTGGCATTTGCGTGAGGTTATCGGCGGAGATGACAGCAAGTATCAGCGTGTGGTGTTTAACGAGATTACCAAATCGGCC ATTCAAAATGCATTTAAAGAGCCCGGTAAGCTTGATATTGACCGGGTGAATGCGCAGCAAGCACGCCGCTTCTTAGACAG AGTGGTTGGGTTTATGGTCTCGCCGCTACTGTGGCAAAAAATTGCCCGTGGCTTATCGGCTGGGCGAGTACAGTCAGTAG CCACTCGGCTTGTGGTCGAGCGTGAACGTGAAATCCGTGCCTTTATTCCAGAAGAGTATTGGCAAATTCACGCCGATACC ACCATGAAAGGTAGCGAGAATGCCAATGTGGCTGCAGATACTCCCATTCGCTTAGAGGCCGTCAAACAGGCAGGCAAAGT ACTCAAGCTTGGCAACAAAGCGCAGACTGATGCCGTACTGGCCGTATTAAAACCGGCCACCTTCGTGGTCAAAGAGCGTG AAGAGAAGCCCACTCAATCTAAGCCGAGTGCGCCTTTTATTACCTCTACTTTACAGCAAGCGGCCAGCACACGTTTGGGC TTTCCTGTCAAAAAGACCATGATGCTAGCTCAGCGCTTGTACGAAGCTGGTCACATTACTTATATGCGTACCGATTCAAC CTTCTTATCCAATGATGCCTTGGCCAGTGTGCGCGGCTTTATTGAAGAGAATTACGGCTCTAAATACTTGCCAGAAAAGC CTAATTTTTATGGCAGCAAACAAAACGCACAAGAGGCTCACGAAGCCATTCGTCCGACCAATGCCAATTTAAAATCCACC CAACTCAAAGGGGTGGATCGTGATGCGATTCGCTTATATGAGCTGATTTGGCGTCAGTTTGTGGCCTGTCAGATGCTACC GGCAAAATATAAGTCGGTTAATCTATTGGTAGAGGCGGGCGATGTTGAGCTAAAAGCCCGCGGTCGCACCATGACCTTTG ACGGCTTTACCAAGGTTATGCCACCTGCCAAAACCGATGACACCTTATTGCCTGATGTCAAACAAGGCGATGAGCTTAAT TTAATAAAACTAGATCCCAGTCAGCACTTCACTAAGCCGCCAGCGCGTTATACGGAAGCAAGCTTAGTTAAAGAGCTTGA GAAAAAAGGTATCGGCCGTCCATCAACTTATGCCTCTATCATCTCAACCATTCAAGACAGAGGGTATGTTCGCTTAGAAA ACAAGCGTCTGTATGCTGAGAAGATGGGTGATATTGTCACCGACCGTCTAACCGAAAGCTTCCCTGAGCTGATGGATTAT ACCTTTACTGCGGGGCTTGAAGATGAGCTTGATCATGTGGCACAAGGCGATCAAGATTGGAAAGCGGTGTTAGATGACTT TTATGGGGACTTTAAGACTAAGCTTGAGCATGCCAAAGATAAAGACGGTATGCGCCCGAATGACCCCACCGATGTACCCG ACGTGCATTGCGATTTATGTGGCCGACCAATGCAGCTGCGTAATGGCTCAACCGGTGTATTCTTAGGCTGTACTGGCTAC AACTTGCCGCCCAAAGAGCGCTGTAAGGGCACCAAAAACCTAATGCCGGTAGAAGCCTTTGCCAACTTAGATGACAGCGA AATCGATGAAAGTGCTGAAGTCAAAGAGTTGATGGAGAAAAAACGTTGTCCTAAGTGTAGCACAGCGATGGATGGCTATA TTGTGGATGGTGGCCTCAAGCTGCATATCTGTGGTAACAACCCAGACTGTGATGGCTATTTATTAGAAGAAGGTATGTTC GAGGTGCCAGGCTCTGATGCGCCGACCATTGACTGTAATAAATGTGATGGTCAGATGGAGCTTAAGACCGGCCGCTTTGG TCCTTATTTTGCTTGTAATAAGTGTGATAATACCCGCAAAGTGCTCAAAAATGGTGAGCCTGCACCGCCGCGCATGGATC CTATTGATATGCCAGAGCTTAAGTCGACCAAGCATGAGGATCACTTTATCTTACGAGAGGGGGCTGCCGGTCTATTCTTA GCGGCCTCTAAGTTCCCTAAAGTGCGCGAGACGCGTCCCCCTAAGCTGTCTGAGCTACGCACCATTAAGGACAAGATGGA TGATAAGTTCCAGTATTTGTTTGATGGTCCAGATCAAGATCCGGAGGGTAACCCTACCATTTTGCGCTGGTCACGTAAGC AAAAAGAGCAGTACATTGGCTCTGAGAGCTTAAAAACAGGCAAGGCCACGCGTTGGGGCGTTTACTGGCGTAAAGGCGAG TGGGTAGAGGAGTAG
Upstream 100 bases:
>100_bases TTTAGGCCAAAGCCAGACATTTAAAGCAGATCTTTGGCTGAGCTCACCAGACTATAAAAAATATAATTTATAAGAAAGTT TAATTAGGACTTTGATATCA
Downstream 100 bases:
>100_bases CCTTTAGCCACAGCCATAAAAAATCCCAGTCAATGACTGGGATTTTTTATGTTAAATGATAATGATAGCGCTGTTAGATA ACAACAAGGGGTAGCACCGC
Product: DNA topoisomerase I
Products: NA
Alternate protein names: DNA topoisomerase I; Omega-protein; Relaxing enzyme; Swivelase; Untwisting enzyme [H]
Number of amino acids: Translated: 884; Mature: 883
Protein sequence:
>884_residues MAKTTAKKTTSTPAASAKGKSLVIVESPAKAKTINKYLGDDFIVRSSIGHVRDLPTSSGVKKKATKTDEKLSKEDKAQQA LVRRMGIDPEHGWKAVYEVLPNKTKVIKELKALAKDADKIYLATDLDREGEAIAWHLREVIGGDDSKYQRVVFNEITKSA IQNAFKEPGKLDIDRVNAQQARRFLDRVVGFMVSPLLWQKIARGLSAGRVQSVATRLVVEREREIRAFIPEEYWQIHADT TMKGSENANVAADTPIRLEAVKQAGKVLKLGNKAQTDAVLAVLKPATFVVKEREEKPTQSKPSAPFITSTLQQAASTRLG FPVKKTMMLAQRLYEAGHITYMRTDSTFLSNDALASVRGFIEENYGSKYLPEKPNFYGSKQNAQEAHEAIRPTNANLKST QLKGVDRDAIRLYELIWRQFVACQMLPAKYKSVNLLVEAGDVELKARGRTMTFDGFTKVMPPAKTDDTLLPDVKQGDELN LIKLDPSQHFTKPPARYTEASLVKELEKKGIGRPSTYASIISTIQDRGYVRLENKRLYAEKMGDIVTDRLTESFPELMDY TFTAGLEDELDHVAQGDQDWKAVLDDFYGDFKTKLEHAKDKDGMRPNDPTDVPDVHCDLCGRPMQLRNGSTGVFLGCTGY NLPPKERCKGTKNLMPVEAFANLDDSEIDESAEVKELMEKKRCPKCSTAMDGYIVDGGLKLHICGNNPDCDGYLLEEGMF EVPGSDAPTIDCNKCDGQMELKTGRFGPYFACNKCDNTRKVLKNGEPAPPRMDPIDMPELKSTKHEDHFILREGAAGLFL AASKFPKVRETRPPKLSELRTIKDKMDDKFQYLFDGPDQDPEGNPTILRWSRKQKEQYIGSESLKTGKATRWGVYWRKGE WVEE
Sequences:
>Translated_884_residues MAKTTAKKTTSTPAASAKGKSLVIVESPAKAKTINKYLGDDFIVRSSIGHVRDLPTSSGVKKKATKTDEKLSKEDKAQQA LVRRMGIDPEHGWKAVYEVLPNKTKVIKELKALAKDADKIYLATDLDREGEAIAWHLREVIGGDDSKYQRVVFNEITKSA IQNAFKEPGKLDIDRVNAQQARRFLDRVVGFMVSPLLWQKIARGLSAGRVQSVATRLVVEREREIRAFIPEEYWQIHADT TMKGSENANVAADTPIRLEAVKQAGKVLKLGNKAQTDAVLAVLKPATFVVKEREEKPTQSKPSAPFITSTLQQAASTRLG FPVKKTMMLAQRLYEAGHITYMRTDSTFLSNDALASVRGFIEENYGSKYLPEKPNFYGSKQNAQEAHEAIRPTNANLKST QLKGVDRDAIRLYELIWRQFVACQMLPAKYKSVNLLVEAGDVELKARGRTMTFDGFTKVMPPAKTDDTLLPDVKQGDELN LIKLDPSQHFTKPPARYTEASLVKELEKKGIGRPSTYASIISTIQDRGYVRLENKRLYAEKMGDIVTDRLTESFPELMDY TFTAGLEDELDHVAQGDQDWKAVLDDFYGDFKTKLEHAKDKDGMRPNDPTDVPDVHCDLCGRPMQLRNGSTGVFLGCTGY NLPPKERCKGTKNLMPVEAFANLDDSEIDESAEVKELMEKKRCPKCSTAMDGYIVDGGLKLHICGNNPDCDGYLLEEGMF EVPGSDAPTIDCNKCDGQMELKTGRFGPYFACNKCDNTRKVLKNGEPAPPRMDPIDMPELKSTKHEDHFILREGAAGLFL AASKFPKVRETRPPKLSELRTIKDKMDDKFQYLFDGPDQDPEGNPTILRWSRKQKEQYIGSESLKTGKATRWGVYWRKGE WVEE >Mature_883_residues AKTTAKKTTSTPAASAKGKSLVIVESPAKAKTINKYLGDDFIVRSSIGHVRDLPTSSGVKKKATKTDEKLSKEDKAQQAL VRRMGIDPEHGWKAVYEVLPNKTKVIKELKALAKDADKIYLATDLDREGEAIAWHLREVIGGDDSKYQRVVFNEITKSAI QNAFKEPGKLDIDRVNAQQARRFLDRVVGFMVSPLLWQKIARGLSAGRVQSVATRLVVEREREIRAFIPEEYWQIHADTT MKGSENANVAADTPIRLEAVKQAGKVLKLGNKAQTDAVLAVLKPATFVVKEREEKPTQSKPSAPFITSTLQQAASTRLGF PVKKTMMLAQRLYEAGHITYMRTDSTFLSNDALASVRGFIEENYGSKYLPEKPNFYGSKQNAQEAHEAIRPTNANLKSTQ LKGVDRDAIRLYELIWRQFVACQMLPAKYKSVNLLVEAGDVELKARGRTMTFDGFTKVMPPAKTDDTLLPDVKQGDELNL IKLDPSQHFTKPPARYTEASLVKELEKKGIGRPSTYASIISTIQDRGYVRLENKRLYAEKMGDIVTDRLTESFPELMDYT FTAGLEDELDHVAQGDQDWKAVLDDFYGDFKTKLEHAKDKDGMRPNDPTDVPDVHCDLCGRPMQLRNGSTGVFLGCTGYN LPPKERCKGTKNLMPVEAFANLDDSEIDESAEVKELMEKKRCPKCSTAMDGYIVDGGLKLHICGNNPDCDGYLLEEGMFE VPGSDAPTIDCNKCDGQMELKTGRFGPYFACNKCDNTRKVLKNGEPAPPRMDPIDMPELKSTKHEDHFILREGAAGLFLA ASKFPKVRETRPPKLSELRTIKDKMDDKFQYLFDGPDQDPEGNPTILRWSRKQKEQYIGSESLKTGKATRWGVYWRKGEW VEE
Specific function: The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another [H]
COG id: COG0550
COG function: function code L; Topoisomerase IA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI4507635, Length=707, Percent_Identity=26.4497878359264, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI10835218, Length=581, Percent_Identity=25.473321858864, Blast_Score=133, Evalue=9e-31, Organism=Escherichia coli, GI1787529, Length=875, Percent_Identity=62.2857142857143, Blast_Score=1118, Evalue=0.0, Organism=Escherichia coli, GI1788061, Length=649, Percent_Identity=22.9583975346687, Blast_Score=104, Evalue=3e-23, Organism=Caenorhabditis elegans, GI32563869, Length=554, Percent_Identity=27.0758122743682, Blast_Score=142, Evalue=7e-34, Organism=Caenorhabditis elegans, GI17555378, Length=534, Percent_Identity=25.2808988764045, Blast_Score=116, Evalue=7e-26, Organism=Saccharomyces cerevisiae, GI6323263, Length=523, Percent_Identity=26.5774378585086, Blast_Score=128, Evalue=4e-30, Organism=Drosophila melanogaster, GI24640096, Length=530, Percent_Identity=26.6037735849057, Blast_Score=126, Evalue=9e-29, Organism=Drosophila melanogaster, GI24585251, Length=642, Percent_Identity=24.6105919003115, Blast_Score=122, Evalue=1e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003601 - InterPro: IPR013497 - InterPro: IPR013824 - InterPro: IPR013825 - InterPro: IPR000380 - InterPro: IPR003602 - InterPro: IPR013498 - InterPro: IPR005733 - InterPro: IPR013263 - InterPro: IPR006171 [H]
Pfam domain/function: PF08272 Topo_Zn_Ribbon; PF01131 Topoisom_bac; PF01751 Toprim; PF01396 zf-C4_Topoisom [H]
EC number: =5.99.1.2 [H]
Molecular weight: Translated: 99120; Mature: 98989
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: PS00396 TOPOISOMERASE_I_PROK
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKTTAKKTTSTPAASAKGKSLVIVESPAKAKTINKYLGDDFIVRSSIGHVRDLPTSSGV CCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEHHCCCHHHCCCCCCCC KKKATKTDEKLSKEDKAQQALVRRMGIDPEHGWKAVYEVLPNKTKVIKELKALAKDADKI CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEE YLATDLDREGEAIAWHLREVIGGDDSKYQRVVFNEITKSAIQNAFKEPGKLDIDRVNAQQ EEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHH ARRFLDRVVGFMVSPLLWQKIARGLSAGRVQSVATRLVVEREREIRAFIPEEYWQIHADT HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCC TMKGSENANVAADTPIRLEAVKQAGKVLKLGNKAQTDAVLAVLKPATFVVKEREEKPTQS EECCCCCCCEECCCCHHHHHHHHCCHHEECCCCHHHHHHHHHHCCHHHEEHHHHCCCCCC KPSAPFITSTLQQAASTRLGFPVKKTMMLAQRLYEAGHITYMRTDSTFLSNDALASVRGF CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHCCHHHHHHHHH IEENYGSKYLPEKPNFYGSKQNAQEAHEAIRPTNANLKSTQLKGVDRDAIRLYELIWRQF HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHH VACQMLPAKYKSVNLLVEAGDVELKARGRTMTFDGFTKVMPPAKTDDTLLPDVKQGDELN HHHHHCCCCCCCEEEEEEECCEEEEECCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCEE LIKLDPSQHFTKPPARYTEASLVKELEKKGIGRPSTYASIISTIQDRGYVRLENKRLYAE EEEECCHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEECCCHHHH KMGDIVTDRLTESFPELMDYTFTAGLEDELDHVAQGDQDWKAVLDDFYGDFKTKLEHAKD HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC KDGMRPNDPTDVPDVHCDLCGRPMQLRNGSTGVFLGCTGYNLPPKERCKGTKNLMPVEAF CCCCCCCCCCCCCCCHHHHCCCCCEECCCCCEEEEEECCCCCCCHHHCCCCCCCCCHHHH ANLDDSEIDESAEVKELMEKKRCPKCSTAMDGYIVDGGLKLHICGNNPDCDGYLLEEGMF CCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEECCCCCCCCEECCCCCE EVPGSDAPTIDCNKCDGQMELKTGRFGPYFACNKCDNTRKVLKNGEPAPPRMDPIDMPEL ECCCCCCCEEECCCCCCEEEEECCCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCCCCH KSTKHEDHFILREGAAGLFLAASKFPKVRETRPPKLSELRTIKDKMDDKFQYLFDGPDQD HCCCCCCCEEEECCCCCEEEEHHCCCCCCCCCCCCHHHHHHHHHHHCCHHEEEECCCCCC PEGNPTILRWSRKQKEQYIGSESLKTGKATRWGVYWRKGEWVEE CCCCCCEEECCHHHHHHHCCCHHHCCCCCCCCCEEEECCCCCCC >Mature Secondary Structure AKTTAKKTTSTPAASAKGKSLVIVESPAKAKTINKYLGDDFIVRSSIGHVRDLPTSSGV CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEHHCCCHHHCCCCCCCC KKKATKTDEKLSKEDKAQQALVRRMGIDPEHGWKAVYEVLPNKTKVIKELKALAKDADKI CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEE YLATDLDREGEAIAWHLREVIGGDDSKYQRVVFNEITKSAIQNAFKEPGKLDIDRVNAQQ EEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHH ARRFLDRVVGFMVSPLLWQKIARGLSAGRVQSVATRLVVEREREIRAFIPEEYWQIHADT HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCC TMKGSENANVAADTPIRLEAVKQAGKVLKLGNKAQTDAVLAVLKPATFVVKEREEKPTQS EECCCCCCCEECCCCHHHHHHHHCCHHEECCCCHHHHHHHHHHCCHHHEEHHHHCCCCCC KPSAPFITSTLQQAASTRLGFPVKKTMMLAQRLYEAGHITYMRTDSTFLSNDALASVRGF CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHCCHHHHHHHHH IEENYGSKYLPEKPNFYGSKQNAQEAHEAIRPTNANLKSTQLKGVDRDAIRLYELIWRQF HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHH VACQMLPAKYKSVNLLVEAGDVELKARGRTMTFDGFTKVMPPAKTDDTLLPDVKQGDELN HHHHHCCCCCCCEEEEEEECCEEEEECCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCEE LIKLDPSQHFTKPPARYTEASLVKELEKKGIGRPSTYASIISTIQDRGYVRLENKRLYAE EEEECCHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEECCCHHHH KMGDIVTDRLTESFPELMDYTFTAGLEDELDHVAQGDQDWKAVLDDFYGDFKTKLEHAKD HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC KDGMRPNDPTDVPDVHCDLCGRPMQLRNGSTGVFLGCTGYNLPPKERCKGTKNLMPVEAF CCCCCCCCCCCCCCCHHHHCCCCCEECCCCCEEEEEECCCCCCCHHHCCCCCCCCCHHHH ANLDDSEIDESAEVKELMEKKRCPKCSTAMDGYIVDGGLKLHICGNNPDCDGYLLEEGMF CCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEECCCCCCCCEECCCCCE EVPGSDAPTIDCNKCDGQMELKTGRFGPYFACNKCDNTRKVLKNGEPAPPRMDPIDMPEL ECCCCCCCEEECCCCCCEEEEECCCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCCCCH KSTKHEDHFILREGAAGLFLAASKFPKVRETRPPKLSELRTIKDKMDDKFQYLFDGPDQD HCCCCCCCEEEECCCCCEEEEHHCCCCCCCCCCCCHHHHHHHHHHHCCHHEEEECCCCCC PEGNPTILRWSRKQKEQYIGSESLKTGKATRWGVYWRKGEWVEE CCCCCCEEECCHHHHHHHCCCHHHCCCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]