| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is 148652208
Identifier: 148652208
GI number: 148652208
Start: 481937
End: 482935
Strand: Direct
Name: 148652208
Synonym: PsycPRwf_0396
Alternate gene names: NA
Gene position: 481937-482935 (Clockwise)
Preceding gene: 148652205
Following gene: 148652209
Centisome position: 16.18
GC content: 47.45
Gene sequence:
>999_bases TTGCGCATAGGCAGTCAATCCAAACAAGCTGCCATAGCTTTGCCTACTAGCTTGGCACTGACCAAAATAATTGAAATGCC TGCGGAGCTGACAGAAGATGAGATAGAAGCGCAAATTCATATCGATGCCGATCAGCACATTCCTTATCCTTTATCACAAG TCTGCCTAGATTTTCAGATTCAAGGTCCGGCTGATACTGATGACAGTATGCAGCAGGTACTTTTGGTTGCTGCGCGCTTA GAGCACGTTGAGCAGCAAGCGGATAGCCTTACCTTTGCACAGTTACAGCCGAAGGTCGTTGATTTGGAGTCACACGCCCA GATATGCGCTTTTCAATTGGCTTGGGATAATTTATCTGTTCATAAGCCAAACAACTTCACGCCTAACAACTTGACACATA ACAACTTGACACATAACAACTTGGCGCCAGCTAATACGCCACAGACCGTGGCGCTTATTGATATTGGCGAGAGCCGCACC ACTTTTTATAGTCACCAATCAGGACAATTGGTCTATCAGTCCCAGCAGCTGTTTGGCGGCGCTCAATTGACTCAGGGCAT TGCCAATCAGCAGGGTATAGACTTGTCGCAGGCTGTGATAATAAAGCACGATTTAGCGGCATACATCACTTGCCATCAGC AGCAGGGCAGTGGTCGGCACAAGCATTCTCACAAGTATGCAGATTTGACCAAGGTTTATACGCAGTTTGTCGCTGATTTA GCGGAGCATATCACCCAAGCTTTTGACGCTTATGCTGCTTTAGCACCGGCAGTCGTCACTGAGCATATTATGCTGTGCGG CGGTAGTGCACTTTTGCCTGATATCGAGGCGATGCTAAAAGACCAGCTAAGCTGTGAGGTCAGTGTGGCCAATCCATTTG GACAAATAAAAGTGTCTGATCAAGTCGATAGGGATGAGTTATATGCCGAGGCGCCTAGGCTAATGAGTGCTTGTGGTCTG GCACTGCGTTGTCAGATGCAAAATCAGGCATATCTGTGA
Upstream 100 bases:
>100_bases AAAGGTCACACTCAGCTGTTAGGCTATGCCATTAAGACGTTACCACCAGGTGAGGTCATAGACAATCAAATCGTAGACTG TGAACAGATGGGTGACCATA
Downstream 100 bases:
>100_bases GCCATATTAATTTATTGCCATGGCGTGCCAAACGGCGTGCTCACCATAACAAGCGCTTTAGACAGATGGTGGTCATAAAC ATTTTAGCAGCGGTGGTCTG
Product: Tfp pilus assembly protein ATPase PilM-like protein
Products: NA
Alternate protein names: Type IV Pilus Biogenesis Protein PilM; Type 4 Fimbrial Biogenesis Protein PilM; Tfp Pilus Assembly Protein ATPase PilM; Fimbrial Assembly Membrane Protein; Tfp Pilus Assembly Protein; Type IV Pilus Assembly Protein; Response Regulator Receiver Domain Protein; Response Regulator Receiver Domain-Containing Protein; Type IV Pilus Biogenesis Protein TapM; Tfp Pilus Assembly Protein ATPase PilM-Like Protein; Type 4 Fimbrial Biogenesis Protein; Type Iv Pilus Assembly Protein Pilm; Type IV Fimbrial Biogenesis Protein PilM; PilM Type IV Pilus Assembly Protein; Fimbrial Assembly Protein
Number of amino acids: Translated: 332; Mature: 332
Protein sequence:
>332_residues MRIGSQSKQAAIALPTSLALTKIIEMPAELTEDEIEAQIHIDADQHIPYPLSQVCLDFQIQGPADTDDSMQQVLLVAARL EHVEQQADSLTFAQLQPKVVDLESHAQICAFQLAWDNLSVHKPNNFTPNNLTHNNLTHNNLAPANTPQTVALIDIGESRT TFYSHQSGQLVYQSQQLFGGAQLTQGIANQQGIDLSQAVIIKHDLAAYITCHQQQGSGRHKHSHKYADLTKVYTQFVADL AEHITQAFDAYAALAPAVVTEHIMLCGGSALLPDIEAMLKDQLSCEVSVANPFGQIKVSDQVDRDELYAEAPRLMSACGL ALRCQMQNQAYL
Sequences:
>Translated_332_residues MRIGSQSKQAAIALPTSLALTKIIEMPAELTEDEIEAQIHIDADQHIPYPLSQVCLDFQIQGPADTDDSMQQVLLVAARL EHVEQQADSLTFAQLQPKVVDLESHAQICAFQLAWDNLSVHKPNNFTPNNLTHNNLTHNNLAPANTPQTVALIDIGESRT TFYSHQSGQLVYQSQQLFGGAQLTQGIANQQGIDLSQAVIIKHDLAAYITCHQQQGSGRHKHSHKYADLTKVYTQFVADL AEHITQAFDAYAALAPAVVTEHIMLCGGSALLPDIEAMLKDQLSCEVSVANPFGQIKVSDQVDRDELYAEAPRLMSACGL ALRCQMQNQAYL >Mature_332_residues MRIGSQSKQAAIALPTSLALTKIIEMPAELTEDEIEAQIHIDADQHIPYPLSQVCLDFQIQGPADTDDSMQQVLLVAARL EHVEQQADSLTFAQLQPKVVDLESHAQICAFQLAWDNLSVHKPNNFTPNNLTHNNLTHNNLAPANTPQTVALIDIGESRT TFYSHQSGQLVYQSQQLFGGAQLTQGIANQQGIDLSQAVIIKHDLAAYITCHQQQGSGRHKHSHKYADLTKVYTQFVADL AEHITQAFDAYAALAPAVVTEHIMLCGGSALLPDIEAMLKDQLSCEVSVANPFGQIKVSDQVDRDELYAEAPRLMSACGL ALRCQMQNQAYL
Specific function: Unknown
COG id: COG4972
COG function: function code NU; Tfp pilus assembly protein, ATPase PilM
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36446; Mature: 36446
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIGSQSKQAAIALPTSLALTKIIEMPAELTEDEIEAQIHIDADQHIPYPLSQVCLDFQI CCCCCCCCCEEEECCHHHHHHHHHHCCHHCCCCCCEEEEEECCCCCCCCCHHHHEEEEEE QGPADTDDSMQQVLLVAARLEHVEQQADSLTFAQLQPKVVDLESHAQICAFQLAWDNLSV CCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEHHHCCCEEEECCCCCCEEEEEEEECCEEE HKPNNFTPNNLTHNNLTHNNLAPANTPQTVALIDIGESRTTFYSHQSGQLVYQSQQLFGG ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCEEEEHHHHHCH AQLTQGIANQQGIDLSQAVIIKHDLAAYITCHQQQGSGRHKHSHKYADLTKVYTQFVADL HHHHHHHCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH AEHITQAFDAYAALAPAVVTEHIMLCGGSALLPDIEAMLKDQLSCEVSVANPFGQIKVSD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEECCCCCEEEECC QVDRDELYAEAPRLMSACGLALRCQMQNQAYL CCCHHHHHHHHHHHHHHCCHHEEEECCCCCCC >Mature Secondary Structure MRIGSQSKQAAIALPTSLALTKIIEMPAELTEDEIEAQIHIDADQHIPYPLSQVCLDFQI CCCCCCCCCEEEECCHHHHHHHHHHCCHHCCCCCCEEEEEECCCCCCCCCHHHHEEEEEE QGPADTDDSMQQVLLVAARLEHVEQQADSLTFAQLQPKVVDLESHAQICAFQLAWDNLSV CCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEHHHCCCEEEECCCCCCEEEEEEEECCEEE HKPNNFTPNNLTHNNLTHNNLAPANTPQTVALIDIGESRTTFYSHQSGQLVYQSQQLFGG ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCEEEEHHHHHCH AQLTQGIANQQGIDLSQAVIIKHDLAAYITCHQQQGSGRHKHSHKYADLTKVYTQFVADL HHHHHHHCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH AEHITQAFDAYAALAPAVVTEHIMLCGGSALLPDIEAMLKDQLSCEVSVANPFGQIKVSD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEECCCCCEEEECC QVDRDELYAEAPRLMSACGLALRCQMQNQAYL CCCHHHHHHHHHHHHHHCCHHEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA