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The map label for this gene is rfbA [H]

Identifier: 148643653

GI number: 148643653

Start: 1653219

End: 1653998

Strand: Reverse

Name: rfbA [H]

Synonym: Msm_1593

Alternate gene names: 148643653

Gene position: 1653998-1653219 (Counterclockwise)

Preceding gene: 148643656

Following gene: 148643652

Centisome position: 89.25

GC content: 27.31

Gene sequence:

>780_bases
ATGTTTAAAGAAATGATTAAAAGAAATACAAGTGAGCATTTCCTACTTAAACAATTAATTAAAAAAAATTTCACTGCTAA
ATACAAAGATTCAATACTTGGAATCTTATGGAGTTTTATAAACCCATTGTTAACTATGCTTTTATTAACTGCAATTTTTT
CAACAATATTTTCCGGAAATATTGCAAATTATCCGGTTTATTTTTTAGCAGGCCGATGTTTATTTGATTTTTTTAGTGCC
GGGACAAAAATAGCTATGAATTCCATAAAAGGAAACAGCGGTATCTTAAAAAGAATATTCGTTCCAAGATACATCTTTGC
TTTTGGAGGAATATGTTCAGAGTTTATCAATTTCATAATTTCATTAATAATACTTGTTGCCGTAATGTATTTAACAGGCC
TTCATTTAACCTTAATGTCAGTATTAGCTATTATTCCTATGATAATACTCTTTGTTATGGTAGTGGGAATCGGATTAATA
TTATCAATCGTATGTACATACTTTAGAGATATTGAATACCTTTACAACATATTTACAATATTATTGATGTATGCATCCGC
TATATTTTATCCTGCAGAGATTATTCCAGAAGCATTAAGACAATATTTATATCTTAATCCTGTGTATTTACTAATTGATC
AATTCAGAGACATTATAATGTATAATACATTACCAAATATCATGAGTGTTATTAATACCAGTTTATTTGCTCTTATTGTA
TTAGTTGCCGGAGTTATAATATTTACAAAATACCAAAGGAAAATTACATTAGAATTGTAG

Upstream 100 bases:

>100_bases
CAGAAACTTTAACTTTCGACATGATTCAGTAACCTATAAATGATATTTAAATTAAATATTAGTATATTGATACTAATTTA
TAAATTTTTGTGTGGAAGTT

Downstream 100 bases:

>100_bases
GTTGTTTATTATGAAAAAGAATTTAAGATTTAAAAATAATATAAATAGTGATTCCAACAATCAAAACAGAAATTTTAATC
AGAGAAAACAACCAAAAGAA

Product: polysaccharide/polyol phosphate ABC transporter, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MFKEMIKRNTSEHFLLKQLIKKNFTAKYKDSILGILWSFINPLLTMLLLTAIFSTIFSGNIANYPVYFLAGRCLFDFFSA
GTKIAMNSIKGNSGILKRIFVPRYIFAFGGICSEFINFIISLIILVAVMYLTGLHLTLMSVLAIIPMIILFVMVVGIGLI
LSIVCTYFRDIEYLYNIFTILLMYASAIFYPAEIIPEALRQYLYLNPVYLLIDQFRDIIMYNTLPNIMSVINTSLFALIV
LVAGVIIFTKYQRKITLEL

Sequences:

>Translated_259_residues
MFKEMIKRNTSEHFLLKQLIKKNFTAKYKDSILGILWSFINPLLTMLLLTAIFSTIFSGNIANYPVYFLAGRCLFDFFSA
GTKIAMNSIKGNSGILKRIFVPRYIFAFGGICSEFINFIISLIILVAVMYLTGLHLTLMSVLAIIPMIILFVMVVGIGLI
LSIVCTYFRDIEYLYNIFTILLMYASAIFYPAEIIPEALRQYLYLNPVYLLIDQFRDIIMYNTLPNIMSVINTSLFALIV
LVAGVIIFTKYQRKITLEL
>Mature_259_residues
MFKEMIKRNTSEHFLLKQLIKKNFTAKYKDSILGILWSFINPLLTMLLLTAIFSTIFSGNIANYPVYFLAGRCLFDFFSA
GTKIAMNSIKGNSGILKRIFVPRYIFAFGGICSEFINFIISLIILVAVMYLTGLHLTLMSVLAIIPMIILFVMVVGIGLI
LSIVCTYFRDIEYLYNIFTILLMYASAIFYPAEIIPEALRQYLYLNPVYLLIDQFRDIIMYNTLPNIMSVINTSLFALIV
LVAGVIIFTKYQRKITLEL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29643; Mature: 29643

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]