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The map label for this gene is rfbB [H]

Identifier: 148643652

GI number: 148643652

Start: 1652132

End: 1653208

Strand: Reverse

Name: rfbB [H]

Synonym: Msm_1592

Alternate gene names: 148643652

Gene position: 1653208-1652132 (Counterclockwise)

Preceding gene: 148643653

Following gene: 148643644

Centisome position: 89.21

GC content: 29.53

Gene sequence:

>1077_bases
ATGAAAAAGAATTTAAGATTTAAAAATAATATAAATAGTGATTCCAACAATCAAAACAGAAATTTTAATCAGAGAAAACA
ACCAAAAGAAGTTATCTTTGACCTGCAAGATGATTACAACAGAATCCCAAATGATATGCAACAGCCTAAATCTCTACACC
CTAATGGTTGGCAGCCATCAAAAAATAATGAAGTTCCAGATTACATCGAACCAATTCATAATAATATATTAGAAAAAGAA
ACTGCAAAACAACATCAGGATGTTGATAATCTAGTTTCACAATTTATTCCAGACTATCATGAAAAAGTTGCAGTTGAACT
TAAAAATGTTTCTTTAAGTTTTAAAATATCTAATGATAAAATTGACAATTTAAAGGAATATGTAATACGTACTATTAAAA
GAAACAAAGAAAAAAGCAGAAAATTCAAAGCTCTTGATAATGTTTCATTTAAAATCTACCAGGGAGAAAAAGTTGGAGTA
ATCGGTTTTAACGGTGCTGGAAAAAGTACTTTACTTAAAATAGTATCTGGTGTTTATGACTGTGACAGTGGAGAAGTAAC
TACTAACGGAATAATCGCACCGTTACTTTCTTTAGGTGCCGGTTTTGATTATAACTATTCAGGAAAAGACAACATCTTTC
TAAATGGTGCTATTTTAGGATATACTGAAAAATTTTTAAAATCAAAATATAATGAAATTGTTGAATTTTCAGAACTTGAA
GAGTTTATTAACTTTCCTGTTAAAAACTATTCCTCAGGAATGCTTGCAAAACTTGGTTTCTCAATAGCTACTGTTGTAAA
TCCGGATATTTTAATTATTGATGAAATTCTGTCTGTCGGTGATGTTAAATTCCAGAAAAAAAGTAATGATAAACTTAAAT
CACTAATGGGCTCAGGTACTACTGTTTTACTTGTATCACACTCAATTCAACAAATCAGAAACATATGTGATAAAGCATTA
TGGATTAATGAAGGAAAAGTTGTAGCTTTTGATGAAGTAAATAAAGTCTGTGACGCTTATCTTAAAGCAGCACAAAGTGC
AAGTAAAGACCAGCTTAAAAACATCAGTCTAGAATAA

Upstream 100 bases:

>100_bases
ATTAATACCAGTTTATTTGCTCTTATTGTATTAGTTGCCGGAGTTATAATATTTACAAAATACCAAAGGAAAATTACATT
AGAATTGTAGGTTGTTTATT

Downstream 100 bases:

>100_bases
TTGTAACTTCCATTTCTTTTTCATTTTTCAAATCTTCAATTAAATCCAAATCAAGATCTCTGGCAGCTTTGTCTGCATTT
ATCATTAAAGTACGGGAACA

Product: polysaccharide/polyol phosphate ABC transporter, ATPase component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MKKNLRFKNNINSDSNNQNRNFNQRKQPKEVIFDLQDDYNRIPNDMQQPKSLHPNGWQPSKNNEVPDYIEPIHNNILEKE
TAKQHQDVDNLVSQFIPDYHEKVAVELKNVSLSFKISNDKIDNLKEYVIRTIKRNKEKSRKFKALDNVSFKIYQGEKVGV
IGFNGAGKSTLLKIVSGVYDCDSGEVTTNGIIAPLLSLGAGFDYNYSGKDNIFLNGAILGYTEKFLKSKYNEIVEFSELE
EFINFPVKNYSSGMLAKLGFSIATVVNPDILIIDEILSVGDVKFQKKSNDKLKSLMGSGTTVLLVSHSIQQIRNICDKAL
WINEGKVVAFDEVNKVCDAYLKAAQSASKDQLKNISLE

Sequences:

>Translated_358_residues
MKKNLRFKNNINSDSNNQNRNFNQRKQPKEVIFDLQDDYNRIPNDMQQPKSLHPNGWQPSKNNEVPDYIEPIHNNILEKE
TAKQHQDVDNLVSQFIPDYHEKVAVELKNVSLSFKISNDKIDNLKEYVIRTIKRNKEKSRKFKALDNVSFKIYQGEKVGV
IGFNGAGKSTLLKIVSGVYDCDSGEVTTNGIIAPLLSLGAGFDYNYSGKDNIFLNGAILGYTEKFLKSKYNEIVEFSELE
EFINFPVKNYSSGMLAKLGFSIATVVNPDILIIDEILSVGDVKFQKKSNDKLKSLMGSGTTVLLVSHSIQQIRNICDKAL
WINEGKVVAFDEVNKVCDAYLKAAQSASKDQLKNISLE
>Mature_358_residues
MKKNLRFKNNINSDSNNQNRNFNQRKQPKEVIFDLQDDYNRIPNDMQQPKSLHPNGWQPSKNNEVPDYIEPIHNNILEKE
TAKQHQDVDNLVSQFIPDYHEKVAVELKNVSLSFKISNDKIDNLKEYVIRTIKRNKEKSRKFKALDNVSFKIYQGEKVGV
IGFNGAGKSTLLKIVSGVYDCDSGEVTTNGIIAPLLSLGAGFDYNYSGKDNIFLNGAILGYTEKFLKSKYNEIVEFSELE
EFINFPVKNYSSGMLAKLGFSIATVVNPDILIIDEILSVGDVKFQKKSNDKLKSLMGSGTTVLLVSHSIQQIRNICDKAL
WINEGKVVAFDEVNKVCDAYLKAAQSASKDQLKNISLE

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=196, Percent_Identity=26.0204081632653, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI45446740, Length=252, Percent_Identity=24.6031746031746, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI47078218, Length=252, Percent_Identity=24.6031746031746, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI153792144, Length=212, Percent_Identity=28.7735849056604, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI31657092, Length=202, Percent_Identity=25.2475247524752, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI27477115, Length=221, Percent_Identity=26.2443438914027, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI116734710, Length=210, Percent_Identity=23.3333333333333, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI6005701, Length=192, Percent_Identity=25.5208333333333, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI48995001, Length=210, Percent_Identity=27.1428571428571, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786398, Length=217, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081709, Length=221, Percent_Identity=24.4343891402715, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081834, Length=218, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081782, Length=206, Percent_Identity=24.7572815533981, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI48994943, Length=206, Percent_Identity=26.2135922330097, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789032, Length=246, Percent_Identity=22.3577235772358, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=210, Percent_Identity=26.1904761904762, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI221460257, Length=237, Percent_Identity=24.8945147679325, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221500365, Length=197, Percent_Identity=24.8730964467005, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007184, Length=197, Percent_Identity=24.8730964467005, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 40456; Mature: 40456

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNLRFKNNINSDSNNQNRNFNQRKQPKEVIFDLQDDYNRIPNDMQQPKSLHPNGWQPS
CCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCC
KNNEVPDYIEPIHNNILEKETAKQHQDVDNLVSQFIPDYHEKVAVELKNVSLSFKISNDK
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHEEEECEEEEEEECCCH
IDNLKEYVIRTIKRNKEKSRKFKALDNVSFKIYQGEKVGVIGFNGAGKSTLLKIVSGVYD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHC
CDSGEVTTNGIIAPLLSLGAGFDYNYSGKDNIFLNGAILGYTEKFLKSKYNEIVEFSELE
CCCCCEECCHHHHHHHHHCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHHHHHHHHHHHH
EFINFPVKNYSSGMLAKLGFSIATVVNPDILIIDEILSVGDVKFQKKSNDKLKSLMGSGT
HHHCCCCCCCCCCHHHHHCCHHEECCCCCEEEHHHHHHHCCCEECCCCHHHHHHHHCCCC
TVLLVSHSIQQIRNICDKALWINEGKVVAFDEVNKVCDAYLKAAQSASKDQLKNISLE
EEEEEHHHHHHHHHHHHHHEEECCCCEEEHHHHHHHHHHHHHHHHCCCHHHHHCCCCC
>Mature Secondary Structure
MKKNLRFKNNINSDSNNQNRNFNQRKQPKEVIFDLQDDYNRIPNDMQQPKSLHPNGWQPS
CCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCC
KNNEVPDYIEPIHNNILEKETAKQHQDVDNLVSQFIPDYHEKVAVELKNVSLSFKISNDK
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHEEEECEEEEEEECCCH
IDNLKEYVIRTIKRNKEKSRKFKALDNVSFKIYQGEKVGVIGFNGAGKSTLLKIVSGVYD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHC
CDSGEVTTNGIIAPLLSLGAGFDYNYSGKDNIFLNGAILGYTEKFLKSKYNEIVEFSELE
CCCCCEECCHHHHHHHHHCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHHHHHHHHHHHH
EFINFPVKNYSSGMLAKLGFSIATVVNPDILIIDEILSVGDVKFQKKSNDKLKSLMGSGT
HHHCCCCCCCCCCHHHHHCCHHEECCCCCEEEHHHHHHHCCCEECCCCHHHHHHHHCCCC
TVLLVSHSIQQIRNICDKALWINEGKVVAFDEVNKVCDAYLKAAQSASKDQLKNISLE
EEEEEHHHHHHHHHHHHHHEEECCCCEEEHHHHHHHHHHHHHHHHCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]