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The map label for this gene is vhcD [H]

Identifier: 148643521

GI number: 148643521

Start: 1485838

End: 1486239

Strand: Reverse

Name: vhcD [H]

Synonym: Msm_1461

Alternate gene names: 148643521

Gene position: 1486239-1485838 (Counterclockwise)

Preceding gene: 148643522

Following gene: 148643520

Centisome position: 80.2

GC content: 33.58

Gene sequence:

>402_bases
ATGAGTGATGTTAAAATAGTAGGATTATTATGTAATTGGTGTTGTTATGGTGGTGCAGATACTGCCGGGACTGCAAGAAT
GCAATATCCTCCAAACATTAGAATTATAAGAGTAATGTGTTCTGGCAGAATTAACCCGTCTTTAGTTTTTAAAGCATTTA
AAGAAGGTGCTGACGGAGTATTTGTAGGGGGATGTCATCTTGGAGATTGTCACTATGATGCAGGAAATTATAAATGGAAC
AGAAGAGCATTTATGGTTCAAGACATTGTAGAAGAATTTGGTATTGAAAAAGAAAGATTTAAATTTGAATGGGTATCTGC
TTCAGAAGGTGAAAAATTCCAAAAAACAATGGAAGAATTTGAAAAAACAGTCAGCAAATTAGGTCCTTTGAATTTAGAAT
AA

Upstream 100 bases:

>100_bases
AAATATAAAAATAGAACTGGATATATTGCAGGAATATCCGAAGAGAAACCTCCATTATACAGTCCAAAAAAAGAGATTTT
ATAAAATAAAAGGTGATAAT

Downstream 100 bases:

>100_bases
AAAAGAGGTTTTGAAATGATTATTTTTAATACTGACGATTGTATTAAATGTGAAGCCTGCGAAGGAATATGTCCTTCAAA
TGCTATAAAAGTACAACCTA

Product: methyl viologen-reducing hydrogenase, delta subunit, MvhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSDVKIVGLLCNWCCYGGADTAGTARMQYPPNIRIIRVMCSGRINPSLVFKAFKEGADGVFVGGCHLGDCHYDAGNYKWN
RRAFMVQDIVEEFGIEKERFKFEWVSASEGEKFQKTMEEFEKTVSKLGPLNLE

Sequences:

>Translated_133_residues
MSDVKIVGLLCNWCCYGGADTAGTARMQYPPNIRIIRVMCSGRINPSLVFKAFKEGADGVFVGGCHLGDCHYDAGNYKWN
RRAFMVQDIVEEFGIEKERFKFEWVSASEGEKFQKTMEEFEKTVSKLGPLNLE
>Mature_132_residues
SDVKIVGLLCNWCCYGGADTAGTARMQYPPNIRIIRVMCSGRINPSLVFKAFKEGADGVFVGGCHLGDCHYDAGNYKWNR
RAFMVQDIVEEFGIEKERFKFEWVSASEGEKFQKTMEEFEKTVSKLGPLNLE

Specific function: Unknown

COG id: COG1908

COG function: function code C; Coenzyme F420-reducing hydrogenase, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mvhD/vhuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003813 [H]

Pfam domain/function: PF02662 FlpD [H]

EC number: NA

Molecular weight: Translated: 15045; Mature: 14914

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVKIVGLLCNWCCYGGADTAGTARMQYPPNIRIIRVMCSGRINPSLVFKAFKEGADGV
CCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCEE
FVGGCHLGDCHYDAGNYKWNRRAFMVQDIVEEFGIEKERFKFEWVSASEGEKFQKTMEEF
EECCEEECCCEECCCCCEECCHHHHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHH
EKTVSKLGPLNLE
HHHHHHCCCCCCC
>Mature Secondary Structure 
SDVKIVGLLCNWCCYGGADTAGTARMQYPPNIRIIRVMCSGRINPSLVFKAFKEGADGV
CCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCEE
FVGGCHLGDCHYDAGNYKWNRRAFMVQDIVEEFGIEKERFKFEWVSASEGEKFQKTMEEF
EECCEEECCCEECCCCCEECCHHHHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHH
EKTVSKLGPLNLE
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1603063 [H]