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The map label for this gene is 148643450

Identifier: 148643450

GI number: 148643450

Start: 1410973

End: 1411842

Strand: Reverse

Name: 148643450

Synonym: Msm_1390

Alternate gene names: NA

Gene position: 1411842-1410973 (Counterclockwise)

Preceding gene: 148643452

Following gene: 148643449

Centisome position: 76.19

GC content: 30.0

Gene sequence:

>870_bases
ATGAAACTAAAAAGCAAAGGTATCATCAATTTAGATATAAATGGTGAAATTTATGACTATAAATTATATCAAAGTCTAAA
TTCATTAGCTAAAACAGGTTCACAGAGAAAATCAGCTAAAGAGTTAAATATTTCACATACTGTTTTTAATAGAAGATTGC
TTAAAGCTGAAGACAAATTGGGAGTTAAAATTACTCAAAAACAGGGAAATGGTACTTTATTAACACCTGAAGGCGAAGCA
TTGCTTGAAGAGTATAAAAAATATTTAATCCAAATAGATAAAACCTCTGAAATCAATATCTGCGGAGGCCATATCAGTAC
AGGGCTTTTAGAAAGTATTGATACAACATTCAATACAAACATTTACAGCAGCAATGATGAAGATGCTTTTAAACTGGCTA
AAAGAGGTGTTGTAGATTTATTAACATTAGATGATCCACTAATAGCTTTTGAACGGGATTTGAATATGATTCCAATAGCT
TATGATTATCTGGTACTGATAGCCAGCCCCAATTCCAAACCTATTAAAAGTATACATGAGTTAGAAGGATTGAATTTTGT
AAATGTTCAGGGTTCTGCCCAAAGGCTTGCATGGAATACTCTAGAACACTATGACATCAATTATAAAATTAAATCAAATG
TAAATTCACAATTTGATGCATTCAAATTAGTCAGAAATTCTGAAAATTTATATAGTTTTTTAAATGCCAGTTATTTCAAA
GGAAATGACATTTTAAAGTTCGATACAAGGCATGTTATCAGTTTAATAAAAGTAAATGATGAAAAAGAAGAGTTGGACCA
ATTCATTGAATATCTGTTAACTGATGGACAAACAGCCATTAAAAACCAGGGTTTCATTCCTATTGATTAA

Upstream 100 bases:

>100_bases
TTTAATTGAAGTTTTCATCAATTCCATCTTATCCAATTCCCAAAATATATTATCAAAACAATATTATTAATTATGATTAC
AGCTTTATATATAATTAATT

Downstream 100 bases:

>100_bases
AAGTTTTCAAATGCCCTAAGGAAATAAAAATTTAATTAAACATATAAAAGTTATTTTTGTTGAAAAATTTATACCAAAGC
AACCAAAAATTTTTTAAAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKLKSKGIINLDINGEIYDYKLYQSLNSLAKTGSQRKSAKELNISHTVFNRRLLKAEDKLGVKITQKQGNGTLLTPEGEA
LLEEYKKYLIQIDKTSEINICGGHISTGLLESIDTTFNTNIYSSNDEDAFKLAKRGVVDLLTLDDPLIAFERDLNMIPIA
YDYLVLIASPNSKPIKSIHELEGLNFVNVQGSAQRLAWNTLEHYDINYKIKSNVNSQFDAFKLVRNSENLYSFLNASYFK
GNDILKFDTRHVISLIKVNDEKEELDQFIEYLLTDGQTAIKNQGFIPID

Sequences:

>Translated_289_residues
MKLKSKGIINLDINGEIYDYKLYQSLNSLAKTGSQRKSAKELNISHTVFNRRLLKAEDKLGVKITQKQGNGTLLTPEGEA
LLEEYKKYLIQIDKTSEINICGGHISTGLLESIDTTFNTNIYSSNDEDAFKLAKRGVVDLLTLDDPLIAFERDLNMIPIA
YDYLVLIASPNSKPIKSIHELEGLNFVNVQGSAQRLAWNTLEHYDINYKIKSNVNSQFDAFKLVRNSENLYSFLNASYFK
GNDILKFDTRHVISLIKVNDEKEELDQFIEYLLTDGQTAIKNQGFIPID
>Mature_289_residues
MKLKSKGIINLDINGEIYDYKLYQSLNSLAKTGSQRKSAKELNISHTVFNRRLLKAEDKLGVKITQKQGNGTLLTPEGEA
LLEEYKKYLIQIDKTSEINICGGHISTGLLESIDTTFNTNIYSSNDEDAFKLAKRGVVDLLTLDDPLIAFERDLNMIPIA
YDYLVLIASPNSKPIKSIHELEGLNFVNVQGSAQRLAWNTLEHYDINYKIKSNVNSQFDAFKLVRNSENLYSFLNASYFK
GNDILKFDTRHVISLIKVNDEKEELDQFIEYLLTDGQTAIKNQGFIPID

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1 [H]

EC number: NA

Molecular weight: Translated: 32797; Mature: 32797

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKSKGIINLDINGEIYDYKLYQSLNSLAKTGSQRKSAKELNISHTVFNRRLLKAEDKL
CCCCCCCEEEEEECCEEEEHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCC
GVKITQKQGNGTLLTPEGEALLEEYKKYLIQIDKTSEINICGGHISTGLLESIDTTFNTN
CEEEEEECCCCCEECCCCHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHHCCHHCCC
IYSSNDEDAFKLAKRGVVDLLTLDDPLIAFERDLNMIPIAYDYLVLIASPNSKPIKSIHE
EECCCCHHHHHHHHCCCEEEEECCCCCEEHHCCCCEEEEEEEEEEEEECCCCCHHHHHHH
LEGLNFVNVQGSAQRLAWNTLEHYDINYKIKSNVNSQFDAFKLVRNSENLYSFLNASYFK
HCCCEEEECCCCHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHCCEEC
GNDILKFDTRHVISLIKVNDEKEELDQFIEYLLTDGQTAIKNQGFIPID
CCCEEEECHHHEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCCCEECC
>Mature Secondary Structure
MKLKSKGIINLDINGEIYDYKLYQSLNSLAKTGSQRKSAKELNISHTVFNRRLLKAEDKL
CCCCCCCEEEEEECCEEEEHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCC
GVKITQKQGNGTLLTPEGEALLEEYKKYLIQIDKTSEINICGGHISTGLLESIDTTFNTN
CEEEEEECCCCCEECCCCHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHHCCHHCCC
IYSSNDEDAFKLAKRGVVDLLTLDDPLIAFERDLNMIPIAYDYLVLIASPNSKPIKSIHE
EECCCCHHHHHHHHCCCEEEEECCCCCEEHHCCCCEEEEEEEEEEEEECCCCCHHHHHHH
LEGLNFVNVQGSAQRLAWNTLEHYDINYKIKSNVNSQFDAFKLVRNSENLYSFLNASYFK
HCCCEEEECCCCHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHCCEEC
GNDILKFDTRHVISLIKVNDEKEELDQFIEYLLTDGQTAIKNQGFIPID
CCCEEEECHHHEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]