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The map label for this gene is fdhD [H]

Identifier: 148643452

GI number: 148643452

Start: 1412515

End: 1413264

Strand: Reverse

Name: fdhD [H]

Synonym: Msm_1392

Alternate gene names: 148643452

Gene position: 1413264-1412515 (Counterclockwise)

Preceding gene: 148643457

Following gene: 148643450

Centisome position: 76.26

GC content: 30.93

Gene sequence:

>750_bases
ATGAAACAGATAATGGAAGAAAAAGCCCAAAATTATAAAAATGGAAAAATAAATTATGTTACAGAAAAAGTCGTTAAAGA
TTCTACCATAACATTAACAATAAACAATGAAATCAGCCGCAGCCTATCTGCAATTGAAGATTCACTTGAAGAATTTGCTG
TAGGTTATTTATTTAATGAGAATATGGTAAAATCCATAGATGACATTGAAAAAATTGAAATCAATGAAAATCATATTAAT
GTAGAAATTGATGATAAACTTCTTAAAACAAAAGAAACAGTTTTATGTTCCGATTCTTCAGGAGGCTGGAGAAGTAAAAT
AAAAGAAATTGAACCGATAAGCTCTGATTTTCAGGTTGAAGCTGATGAACTGATTAACAGAATTGAAGAACTGAAAAATA
ATGCTCAAATCTGGCAGGCCACAGGAGGGACACATGTAGCTGGAATTGTTTATAAAAATAATTTCATTGTAAAAGAAGAT
GTAAGTCGACATGTAGCAGTAGATAAAGTTATTGGCTATGGCATATTGCATAATTATGATTTAAGCAACAGCTATGTAAT
TTACAGCGGCAGAATGCCTGCAGACATGGTAATAAAAATAGTTAGATCCGGAATACCGGTACTTGCATCAAATGCTGCTC
CGGCATATTCAGGATGTGAAACAGCTAAAAAAGGAAATGTAACTCTTGTTGGATTTTTAAGAGGTCAAAGATTTAATGTT
TACAATAATAAAAATAGAATAATATTTTAG

Upstream 100 bases:

>100_bases
ATATTGATATGAAATTATTTACTTAAAGAGATAAATAATTTACTAAAACTTTTAAGTTATTTATATTCAAAAATCAAATA
ATGAATTAAAGGGGAATTAT

Downstream 100 bases:

>100_bases
AGTTAAAATTACTCTAAAACAGTGTGTCTTGATTTTAAATCACTTTCTGTTTGATGCATTTTTTCCATTAATTCGGAAAC
AATTGCATCTAAAAATACTA

Product: formate dehydrogenase accessory protein FdhD, FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKQIMEEKAQNYKNGKINYVTEKVVKDSTITLTINNEISRSLSAIEDSLEEFAVGYLFNENMVKSIDDIEKIEINENHIN
VEIDDKLLKTKETVLCSDSSGGWRSKIKEIEPISSDFQVEADELINRIEELKNNAQIWQATGGTHVAGIVYKNNFIVKED
VSRHVAVDKVIGYGILHNYDLSNSYVIYSGRMPADMVIKIVRSGIPVLASNAAPAYSGCETAKKGNVTLVGFLRGQRFNV
YNNKNRIIF

Sequences:

>Translated_249_residues
MKQIMEEKAQNYKNGKINYVTEKVVKDSTITLTINNEISRSLSAIEDSLEEFAVGYLFNENMVKSIDDIEKIEINENHIN
VEIDDKLLKTKETVLCSDSSGGWRSKIKEIEPISSDFQVEADELINRIEELKNNAQIWQATGGTHVAGIVYKNNFIVKED
VSRHVAVDKVIGYGILHNYDLSNSYVIYSGRMPADMVIKIVRSGIPVLASNAAPAYSGCETAKKGNVTLVGFLRGQRFNV
YNNKNRIIF
>Mature_249_residues
MKQIMEEKAQNYKNGKINYVTEKVVKDSTITLTINNEISRSLSAIEDSLEEFAVGYLFNENMVKSIDDIEKIEINENHIN
VEIDDKLLKTKETVLCSDSSGGWRSKIKEIEPISSDFQVEADELINRIEELKNNAQIWQATGGTHVAGIVYKNNFIVKED
VSRHVAVDKVIGYGILHNYDLSNSYVIYSGRMPADMVIKIVRSGIPVLASNAAPAYSGCETAKKGNVTLVGFLRGQRFNV
YNNKNRIIF

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=262, Percent_Identity=24.8091603053435, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 28000; Mature: 28000

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQIMEEKAQNYKNGKINYVTEKVVKDSTITLTINNEISRSLSAIEDSLEEFAVGYLFNE
CHHHHHHHHHCCCCCCEEEEEHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHEECC
NMVKSIDDIEKIEINENHINVEIDDKLLKTKETVLCSDSSGGWRSKIKEIEPISSDFQVE
HHHHHHCCHHEEEECCCEEEEEECCHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCCEEC
ADELINRIEELKNNAQIWQATGGTHVAGIVYKNNFIVKEDVSRHVAVDKVIGYGILHNYD
HHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHEECCC
LSNSYVIYSGRMPADMVIKIVRSGIPVLASNAAPAYSGCETAKKGNVTLVGFLRGQRFNV
CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEE
YNNKNRIIF
EECCCEEEC
>Mature Secondary Structure
MKQIMEEKAQNYKNGKINYVTEKVVKDSTITLTINNEISRSLSAIEDSLEEFAVGYLFNE
CHHHHHHHHHCCCCCCEEEEEHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHEECC
NMVKSIDDIEKIEINENHINVEIDDKLLKTKETVLCSDSSGGWRSKIKEIEPISSDFQVE
HHHHHHCCHHEEEECCCEEEEEECCHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCCEEC
ADELINRIEELKNNAQIWQATGGTHVAGIVYKNNFIVKEDVSRHVAVDKVIGYGILHNYD
HHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHEECCC
LSNSYVIYSGRMPADMVIKIVRSGIPVLASNAAPAYSGCETAKKGNVTLVGFLRGQRFNV
CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEE
YNNKNRIIF
EECCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]