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The map label for this gene is rpl21e

Identifier: 148643437

GI number: 148643437

Start: 1396427

End: 1396723

Strand: Reverse

Name: rpl21e

Synonym: Msm_1377

Alternate gene names: 148643437

Gene position: 1396723-1396427 (Counterclockwise)

Preceding gene: 148643438

Following gene: 148643436

Centisome position: 75.37

GC content: 31.99

Gene sequence:

>297_bases
ATGCAAAGATCAAGAGGATTTAGAAGTAAATCAAGAAGAAAAATGACTAAAGTAGTAAGAGAAGGCAGATCCAACCCAAT
TACCAACAAACTTCAAAAATTTGAAGAAGGAGACTTAGTCCACATTACTATTAACCCAAGTATCCAAAAAGGTCAACCAC
ATCCAAGGTTCCATGGAAAAACTGGTAAAATTACTGATAAAAAAGGAAAAGCTTACATTGTTTCATTAACTGATGGAAAC
AAAGCAAAAGAATTAATTATCAGACCTGATCACTTAAAATTACAAACAAGCCAATAA

Upstream 100 bases:

>100_bases
TTATATTCTATGTTACTAGTATTATGGGCATTTTATACTAGGTAGCTGATAACATAGATTCATTTACCCAGTGCATTAAT
ATATAAAAGAGGTTATTTAA

Downstream 100 bases:

>100_bases
ATTGATAACTATGATTGGGAAAAAAATAATTGAGAGCGAACCAATTCAAAGTGTAAAAGTTAAAGAAGCTCTCGAAGAAT
TTTCACAGGAAAATGAATTA

Product: 50S ribosomal protein L21e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MQRSRGFRSKSRRKMTKVVREGRSNPITNKLQKFEEGDLVHITINPSIQKGQPHPRFHGKTGKITDKKGKAYIVSLTDGN
KAKELIIRPDHLKLQTSQ

Sequences:

>Translated_98_residues
MQRSRGFRSKSRRKMTKVVREGRSNPITNKLQKFEEGDLVHITINPSIQKGQPHPRFHGKTGKITDKKGKAYIVSLTDGN
KAKELIIRPDHLKLQTSQ
>Mature_98_residues
MQRSRGFRSKSRRKMTKVVREGRSNPITNKLQKFEEGDLVHITINPSIQKGQPHPRFHGKTGKITDKKGKAYIVSLTDGN
KAKELIIRPDHLKLQTSQ

Specific function: Unknown

COG id: COG2139

COG function: function code J; Ribosomal protein L21E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL21_METS3 (A5UN04)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273950.1
- ProteinModelPortal:   A5UN04
- SMR:   A5UN04
- STRING:   A5UN04
- GeneID:   5216871
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_1377
- eggNOG:   arNOG13006
- HOGENOM:   HBG497499
- OMA:   RFHGKTG
- ProtClustDB:   PRK04306
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00369
- InterPro:   IPR001147
- InterPro:   IPR022856
- InterPro:   IPR018259
- InterPro:   IPR008991
- PANTHER:   PTHR20981

Pfam domain/function: PF01157 Ribosomal_L21e; SSF50104 Transl_SH3_like

EC number: NA

Molecular weight: Translated: 11218; Mature: 11218

Theoretical pI: Translated: 11.59; Mature: 11.59

Prosite motif: PS01171 RIBOSOMAL_L21E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRSRGFRSKSRRKMTKVVREGRSNPITNKLQKFEEGDLVHITINPSIQKGQPHPRFHGK
CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC
TGKITDKKGKAYIVSLTDGNKAKELIIRPDHLKLQTSQ
CCCEECCCCCEEEEEECCCCCCEEEEECCCCEEEEECC
>Mature Secondary Structure
MQRSRGFRSKSRRKMTKVVREGRSNPITNKLQKFEEGDLVHITINPSIQKGQPHPRFHGK
CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC
TGKITDKKGKAYIVSLTDGNKAKELIIRPDHLKLQTSQ
CCCEECCCCCEEEEEECCCCCCEEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA