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The map label for this gene is 148643436

Identifier: 148643436

GI number: 148643436

Start: 1396072

End: 1396416

Strand: Reverse

Name: 148643436

Synonym: Msm_1376

Alternate gene names: NA

Gene position: 1396416-1396072 (Counterclockwise)

Preceding gene: 148643437

Following gene: 148643435

Centisome position: 75.35

GC content: 28.41

Gene sequence:

>345_bases
ATGATTGGGAAAAAAATAATTGAGAGCGAACCAATTCAAAGTGTAAAAGTTAAAGAAGCTCTCGAAGAATTTTCACAGGA
AAATGAATTAAACTACGAACAAAATATCACTTTAAATCATCTTTCAAGATTTAAAAGATACTCTGTTGAAGACAGCGAAA
AAATAATATCTGAACTTAAAGATAAAATTGGTTTAAGGCATAAAGTAGCTGTTCGTATTGTTGATTTAATTCCACAAGAT
TTATCCGATTTAAGATTAATATTTGCTAAAGAAGCTACACACATTGAAAAAGAGCAAATGGAAGATATTCTTGAAATCTT
AGATCAGTATACTATCATCGAATAG

Upstream 100 bases:

>100_bases
AAAGCTTACATTGTTTCATTAACTGATGGAAACAAAGCAAAAGAATTAATTATCAGACCTGATCACTTAAAATTACAAAC
AAGCCAATAAATTGATAACT

Downstream 100 bases:

>100_bases
TTTTTAAACTATTCTTCTTTTTTTACTTTTTAATTAACAAATAATCAAATTACTAATTTTAGATATGTTTATTTAAGTTA
ACAATTAAAACATATAAGTA

Product: DNA-directed RNA polymerase subunit F

Products: diphosphate; RNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MIGKKIIESEPIQSVKVKEALEEFSQENELNYEQNITLNHLSRFKRYSVEDSEKIISELKDKIGLRHKVAVRIVDLIPQD
LSDLRLIFAKEATHIEKEQMEDILEILDQYTIIE

Sequences:

>Translated_114_residues
MIGKKIIESEPIQSVKVKEALEEFSQENELNYEQNITLNHLSRFKRYSVEDSEKIISELKDKIGLRHKVAVRIVDLIPQD
LSDLRLIFAKEATHIEKEQMEDILEILDQYTIIE
>Mature_114_residues
MIGKKIIESEPIQSVKVKEALEEFSQENELNYEQNITLNHLSRFKRYSVEDSEKIISELKDKIGLRHKVAVRIVDLIPQD
LSDLRLIFAKEATHIEKEQMEDILEILDQYTIIE

Specific function: Unknown

COG id: COG1460

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010997
- InterPro:   IPR015906
- InterPro:   IPR015907
- InterPro:   IPR005574 [H]

Pfam domain/function: PF03874 RNA_pol_Rpb4 [H]

EC number: 2.7.7.6

Molecular weight: Translated: 13396; Mature: 13396

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGKKIIESEPIQSVKVKEALEEFSQENELNYEQNITLNHLSRFKRYSVEDSEKIISELK
CCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHH
DKIGLRHKVAVRIVDLIPQDLSDLRLIFAKEATHIEKEQMEDILEILDQYTIIE
HHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIGKKIIESEPIQSVKVKEALEEFSQENELNYEQNITLNHLSRFKRYSVEDSEKIISELK
CCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHH
DKIGLRHKVAVRIVDLIPQDLSDLRLIFAKEATHIEKEQMEDILEILDQYTIIE
HHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]