Click here to switch to the map view.

The map label for this gene is ydcI [H]

Identifier: 148643352

GI number: 148643352

Start: 1296853

End: 1299000

Strand: Reverse

Name: ydcI [H]

Synonym: Msm_1292

Alternate gene names: 148643352

Gene position: 1299000-1296853 (Counterclockwise)

Preceding gene: 148643355

Following gene: 148643351

Centisome position: 70.1

GC content: 33.05

Gene sequence:

>2148_bases
ATGATAGCTAAAACACTCGAAAAAGAATTAAACCTGGAACAATGGCAAGTAAACAAAGTAATCAGATTAATTGATGAGGG
CAACACTATTCCATTTATTGCAAGATACAGAAAGGATGTTACCGGCTCTTTAAATGATGAACTTTTAAGAAAATTCGATG
AAAGGCTTAAATATCTTAGAAACTTGGAAGATAAAAAAACCAAAATCATAGAGCGCATTGACAACTTAGGAAAGTTAGAC
GACAACTTAAAAAATCAAATTCTTAATGCAGAAACATTAGTGGAACTTGATGATTTATATAGGCCCTATAAAAGCAAAAA
AAGGACACGTGCAACAATAGCAAAACAAAAAGGTTTGGAACCGCTGGCCAGTCTTATTTTGGCTCAGGAAGTTAAAGAAC
CTGTTTCCAAAATAGCTGAAAATTATGTTACAGACGAAGTTAAAACACCCAAAGAAGCTATTGAAGGAGCGCAAGACATA
ATTGCTGAGATTATTTCTGACAATTCCACTTTTAGAAAAAAAATCAGACAGAATACTTTTTATAATGGAGTAATTGAAAC
TAAAGCTAAAAATAAAGATGAATCTGCTTCAGGATATGAAATTTATTTTAATTATTCAGAAAAACTATCTAAAATTCCAC
CACATAGGATATTAGCCATTAACAGAGCGGAAAATGAAGACATTATTAAAGTAAAAGTGGATATTGAAGAAGACGACATT
ATCCAATACCTTAAAAGACACACACTTAAAAACTGCTCCAAAGTTCCTGAAATGATTGAATATAACCCTCATACCACCCC
AATTATTACAGAATCTATTGAAGATTCATATAAACGTTTGATTTCACCGGCTATTGAGCGGGAAATTAGAAGTTATTTAA
CTAAAAAGGCTGAAGAGAAATCTATTGAAGTTTTTGCTAAAAATTTAAGCCAACTTCTTATGGAAAGCCCCTTAAGTGGA
AAAACTATTTTAGGATGGGATCCTGCTTTTAGAACAGGATGTAAATTAGCTGTTATTGATTCAACAGGTAAAGTTTTAGA
AACATCCCTAATCTATCCAACTGAACCTCAAAATAAGGTTAAGGAATCTGAAAAAGTGGTACTTGATTTAATTAAAAAGT
ACGATGTCGATGTAATAGCTATCGGAAATGGAACTGCTTCAAGGGAATCTGAAGAAATAGTGGCTAATATTATTAAAAAC
ACTTCTGTTGAATACATCATTGTTAATGAAGCTGGCGCATCTGTTTATTCTGCAAGTAAACTGGCTGATGAAGAGTTTCC
TGATTTTAATGAAGGTGAACGCAGTGCTGTTTCAATAGCCAGAAGACTGCAGGATCCGTTGGCTGAACTTGTTAAAATTG
ATCCCAAATCTATTGGAGTTGGTCAGTACCAGCATGACATGAATCAGAAACAATTGAATGAGTCTTTAGGAGGAGTTGTT
GAAAGAGTAGTTAATGAAGTTGGTGTTGATTTAAATACTGCTTCATCTAGCTTACTTAATTATGTTTCCGGAATTACCAA
ATCAACTGCTAAAAATATCATTAGCTATAGAGAAGAAAACGGTAAATTCAACAACCGAAAAGAACTTTTAAATGTTAAAA
AACTTGGTAAAAAGACTTTTGAGCAATGTGCAGGATTTGTAAAAATAGACAATCCCGAACATCCTTTAGACAACACTACA
ATACATCCCGAATCTTACGATGCTGCAGTCAAACTTTTAGATAAATTGGGATACAGTTTGGCAGATATCGGTTCAGATAA
CTTAAAATTAGATAACCTGAATTATGATGAATTATCTAAGCAGTTAGACGTTGGTGTTATTACCCTGCAGGATATTGTTA
AAGAACTTAAAAAACCTGGAAGAGATCCTCGTGAAGACATGCCAAAACCTGTTTTAAGAAAAAATGTTTTATCAATAGAT
GATCTAGAAGAAGGCATGATTATGCAGGGAACTGTTAGAAATATTGTTGATTTTGGAGCTTTTGTAGATATTGGAGTTCA
TCAGGACGGATTAGTCCATATTTCACAGCTGGCTGACAAATTTGTAAAGCACCCTCTGGATATTGTAAGTGTCGGAGATA
TTGTTGATGTTAAGGTTTTAGATGTTGATTTAGCTAGAAATAGAATACAATTATCAATGTTAATATAA

Upstream 100 bases:

>100_bases
TACTCTTAGCAATAATTTATAATTTCAATTTTAAAAAAGATGAAATTATATTAATTAAAAAAAAGATAATTTCTTGTAAT
ATATTAGGAATGTAATTTTA

Downstream 100 bases:

>100_bases
ATAAAGGTTATTAAAATGTTTAAATTAGAAAATAAGAAATATTTCATTGGAATATATGCTTTAATATTAAGCTTATTCAG
CCTGTATTTCACATATAGGG

Product: transcriptional accessory protein S1 RNA binding family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 715; Mature: 715

Protein sequence:

>715_residues
MIAKTLEKELNLEQWQVNKVIRLIDEGNTIPFIARYRKDVTGSLNDELLRKFDERLKYLRNLEDKKTKIIERIDNLGKLD
DNLKNQILNAETLVELDDLYRPYKSKKRTRATIAKQKGLEPLASLILAQEVKEPVSKIAENYVTDEVKTPKEAIEGAQDI
IAEIISDNSTFRKKIRQNTFYNGVIETKAKNKDESASGYEIYFNYSEKLSKIPPHRILAINRAENEDIIKVKVDIEEDDI
IQYLKRHTLKNCSKVPEMIEYNPHTTPIITESIEDSYKRLISPAIEREIRSYLTKKAEEKSIEVFAKNLSQLLMESPLSG
KTILGWDPAFRTGCKLAVIDSTGKVLETSLIYPTEPQNKVKESEKVVLDLIKKYDVDVIAIGNGTASRESEEIVANIIKN
TSVEYIIVNEAGASVYSASKLADEEFPDFNEGERSAVSIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKQLNESLGGVV
ERVVNEVGVDLNTASSSLLNYVSGITKSTAKNIISYREENGKFNNRKELLNVKKLGKKTFEQCAGFVKIDNPEHPLDNTT
IHPESYDAAVKLLDKLGYSLADIGSDNLKLDNLNYDELSKQLDVGVITLQDIVKELKKPGRDPREDMPKPVLRKNVLSID
DLEEGMIMQGTVRNIVDFGAFVDIGVHQDGLVHISQLADKFVKHPLDIVSVGDIVDVKVLDVDLARNRIQLSMLI

Sequences:

>Translated_715_residues
MIAKTLEKELNLEQWQVNKVIRLIDEGNTIPFIARYRKDVTGSLNDELLRKFDERLKYLRNLEDKKTKIIERIDNLGKLD
DNLKNQILNAETLVELDDLYRPYKSKKRTRATIAKQKGLEPLASLILAQEVKEPVSKIAENYVTDEVKTPKEAIEGAQDI
IAEIISDNSTFRKKIRQNTFYNGVIETKAKNKDESASGYEIYFNYSEKLSKIPPHRILAINRAENEDIIKVKVDIEEDDI
IQYLKRHTLKNCSKVPEMIEYNPHTTPIITESIEDSYKRLISPAIEREIRSYLTKKAEEKSIEVFAKNLSQLLMESPLSG
KTILGWDPAFRTGCKLAVIDSTGKVLETSLIYPTEPQNKVKESEKVVLDLIKKYDVDVIAIGNGTASRESEEIVANIIKN
TSVEYIIVNEAGASVYSASKLADEEFPDFNEGERSAVSIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKQLNESLGGVV
ERVVNEVGVDLNTASSSLLNYVSGITKSTAKNIISYREENGKFNNRKELLNVKKLGKKTFEQCAGFVKIDNPEHPLDNTT
IHPESYDAAVKLLDKLGYSLADIGSDNLKLDNLNYDELSKQLDVGVITLQDIVKELKKPGRDPREDMPKPVLRKNVLSID
DLEEGMIMQGTVRNIVDFGAFVDIGVHQDGLVHISQLADKFVKHPLDIVSVGDIVDVKVLDVDLARNRIQLSMLI
>Mature_715_residues
MIAKTLEKELNLEQWQVNKVIRLIDEGNTIPFIARYRKDVTGSLNDELLRKFDERLKYLRNLEDKKTKIIERIDNLGKLD
DNLKNQILNAETLVELDDLYRPYKSKKRTRATIAKQKGLEPLASLILAQEVKEPVSKIAENYVTDEVKTPKEAIEGAQDI
IAEIISDNSTFRKKIRQNTFYNGVIETKAKNKDESASGYEIYFNYSEKLSKIPPHRILAINRAENEDIIKVKVDIEEDDI
IQYLKRHTLKNCSKVPEMIEYNPHTTPIITESIEDSYKRLISPAIEREIRSYLTKKAEEKSIEVFAKNLSQLLMESPLSG
KTILGWDPAFRTGCKLAVIDSTGKVLETSLIYPTEPQNKVKESEKVVLDLIKKYDVDVIAIGNGTASRESEEIVANIIKN
TSVEYIIVNEAGASVYSASKLADEEFPDFNEGERSAVSIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKQLNESLGGVV
ERVVNEVGVDLNTASSSLLNYVSGITKSTAKNIISYREENGKFNNRKELLNVKKLGKKTFEQCAGFVKIDNPEHPLDNTT
IHPESYDAAVKLLDKLGYSLADIGSDNLKLDNLNYDELSKQLDVGVITLQDIVKELKKPGRDPREDMPKPVLRKNVLSID
DLEEGMIMQGTVRNIVDFGAFVDIGVHQDGLVHISQLADKFVKHPLDIVSVGDIVDVKVLDVDLARNRIQLSMLI

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=788, Percent_Identity=36.2944162436548, Blast_Score=453, Evalue=1e-127,
Organism=Homo sapiens, GI27597090, Length=722, Percent_Identity=22.9916897506925, Blast_Score=113, Evalue=7e-25,
Organism=Escherichia coli, GI87082262, Length=726, Percent_Identity=43.5261707988981, Blast_Score=599, Evalue=1e-172,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=50.6666666666667, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI145693187, Length=73, Percent_Identity=52.0547945205479, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=757, Percent_Identity=33.6856010568032, Blast_Score=300, Evalue=2e-81,
Organism=Caenorhabditis elegans, GI17552892, Length=311, Percent_Identity=29.5819935691318, Blast_Score=89, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6321552, Length=200, Percent_Identity=29.5, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI62484314, Length=743, Percent_Identity=34.8586810228802, Blast_Score=416, Evalue=1e-116,
Organism=Drosophila melanogaster, GI24640080, Length=715, Percent_Identity=21.5384615384615, Blast_Score=108, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80693; Mature: 80693

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKTLEKELNLEQWQVNKVIRLIDEGNTIPFIARYRKDVTGSLNDELLRKFDERLKYLR
CCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
NLEDKKTKIIERIDNLGKLDDNLKNQILNAETLVELDDLYRPYKSKKRTRATIAKQKGLE
CCCHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCHH
PLASLILAQEVKEPVSKIAENYVTDEVKTPKEAIEGAQDIIAEIISDNSTFRKKIRQNTF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
YNGVIETKAKNKDESASGYEIYFNYSEKLSKIPPHRILAINRAENEDIIKVKVDIEEDDI
HCCEEECCCCCCCCCCCCEEEEEEHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCHHHH
IQYLKRHTLKNCSKVPEMIEYNPHTTPIITESIEDSYKRLISPAIEREIRSYLTKKAEEK
HHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIEVFAKNLSQLLMESPLSGKTILGWDPAFRTGCKLAVIDSTGKVLETSLIYPTEPQNKV
HHHHHHHHHHHHHHHCCCCCCEEECCCHHHHCCCEEEEECCCCCCCEEEEECCCCCHHHH
KESEKVVLDLIKKYDVDVIAIGNGTASRESEEIVANIIKNTSVEYIIVNEAGASVYSASK
HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH
LADEEFPDFNEGERSAVSIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKQLNESLGGVV
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHH
ERVVNEVGVDLNTASSSLLNYVSGITKSTAKNIISYREENGKFNNRKELLNVKKLGKKTF
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EQCAGFVKIDNPEHPLDNTTIHPESYDAAVKLLDKLGYSLADIGSDNLKLDNLNYDELSK
HHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCEEECCCCHHHHHH
QLDVGVITLQDIVKELKKPGRDPREDMPKPVLRKNVLSIDDLEEGMIMQGTVRNIVDFGA
HHCCCEEHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCC
FVDIGVHQDGLVHISQLADKFVKHPLDIVSVGDIVDVKVLDVDLARNRIQLSMLI
CEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCEEEEEEEEHHHCCCEEEEEEEC
>Mature Secondary Structure
MIAKTLEKELNLEQWQVNKVIRLIDEGNTIPFIARYRKDVTGSLNDELLRKFDERLKYLR
CCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
NLEDKKTKIIERIDNLGKLDDNLKNQILNAETLVELDDLYRPYKSKKRTRATIAKQKGLE
CCCHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCHH
PLASLILAQEVKEPVSKIAENYVTDEVKTPKEAIEGAQDIIAEIISDNSTFRKKIRQNTF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
YNGVIETKAKNKDESASGYEIYFNYSEKLSKIPPHRILAINRAENEDIIKVKVDIEEDDI
HCCEEECCCCCCCCCCCCEEEEEEHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCHHHH
IQYLKRHTLKNCSKVPEMIEYNPHTTPIITESIEDSYKRLISPAIEREIRSYLTKKAEEK
HHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIEVFAKNLSQLLMESPLSGKTILGWDPAFRTGCKLAVIDSTGKVLETSLIYPTEPQNKV
HHHHHHHHHHHHHHHCCCCCCEEECCCHHHHCCCEEEEECCCCCCCEEEEECCCCCHHHH
KESEKVVLDLIKKYDVDVIAIGNGTASRESEEIVANIIKNTSVEYIIVNEAGASVYSASK
HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH
LADEEFPDFNEGERSAVSIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKQLNESLGGVV
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHH
ERVVNEVGVDLNTASSSLLNYVSGITKSTAKNIISYREENGKFNNRKELLNVKKLGKKTF
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EQCAGFVKIDNPEHPLDNTTIHPESYDAAVKLLDKLGYSLADIGSDNLKLDNLNYDELSK
HHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCEEECCCCHHHHHH
QLDVGVITLQDIVKELKKPGRDPREDMPKPVLRKNVLSIDDLEEGMIMQGTVRNIVDFGA
HHCCCEEHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCC
FVDIGVHQDGLVHISQLADKFVKHPLDIVSVGDIVDVKVLDVDLARNRIQLSMLI
CEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCEEEEEEEEHHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]