Click here to switch to the map view.

The map label for this gene is 148643277

Identifier: 148643277

GI number: 148643277

Start: 1218951

End: 1219859

Strand: Reverse

Name: 148643277

Synonym: Msm_1217

Alternate gene names: NA

Gene position: 1219859-1218951 (Counterclockwise)

Preceding gene: 148643279

Following gene: 148643274

Centisome position: 65.83

GC content: 29.26

Gene sequence:

>909_bases
TTGGAAAAACCACAATTGATTAATTTTATAGCTAAAGTGATGGAGGATTCAGGTTTTAAAGTTTATAAGAATTTTAAAAC
TTCACAAAGGGTTATAGATATTTATGCAATTTTGCCTACAACAATCGGGGATTTTGGAGTAGTTGTAGCATGTAAAAACT
ATGATAAAAATTTTGAAGTTGGCGTTGATGTATTAAGAGATATGGAACGTGTAGCTGAAAGTTTAAAAGCTTCTAAAGTA
GCTATTATTGCATCATCTAGTTTTACAAATCAGGCTACTAATTATGCTCTTAGAAAAAATATCAAGCTTGTTGATAGGGA
TGATTTAGTTGAACTGGCTAAAAAATATCAGGATAAAACAGAAACTCAATCAACTTTGGATGTCGGAAAAGAAGAGGAAG
TAGCTAATGAAGATTATTATGATTATTCATATGATTCTGATGATATGGATTATTTAATGAGAAAACAGGATGAAAAAGAA
TTTATTTATAACAGCTCAAATTCTTTGCATGCTTATGATAACTCTCATCGTTCTCATGGATTGCTGTCTAAATTTGAAGG
TCATAATAGGTCTCAACAAAGAGCAAGTTTGGCTCCTGTAAATTCTTATTATTATGATTCTAAACCAAAAATGAGTTTTA
ATATTAGTGAAACATTATCCAGACTTTTAGCTAACCCTATAGCAGTTATACTTTTAGTTGTAATTGTCTCTTATGCATTA
TCCTATCTTTTAGGCAATGTTTTAAAAGCTGGTGGTGGAATTGGCGGTTTAGTTGAAATGCTTGTTGCATTAGTAATGTC
TTATGGATTAACTTATTTCTTTTCAGAAAGAAACAGGTATTTCATTATTAGAGGAACCGTTATATTCTTTGTTTCATTAA
TTATATTGATTATATTAATTTTTGTTTAA

Upstream 100 bases:

>100_bases
CTTAAAATAATTTATGCTGATATGATAAACTTTAATAACAATTTCATGTATAAATTATATTAATAGATTTTTTTTGAAAT
AAACACTTACGGGTGGAAAA

Downstream 100 bases:

>100_bases
ATTTAATATTTTTATAATTTAAAACAATCACAATAAATCCCAATAAATACAGGAACCATATCATAATATCTGTAGGTCCT
GTTTCAATCCAGATTAAGGT

Product: type II restriction endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MEKPQLINFIAKVMEDSGFKVYKNFKTSQRVIDIYAILPTTIGDFGVVVACKNYDKNFEVGVDVLRDMERVAESLKASKV
AIIASSSFTNQATNYALRKNIKLVDRDDLVELAKKYQDKTETQSTLDVGKEEEVANEDYYDYSYDSDDMDYLMRKQDEKE
FIYNSSNSLHAYDNSHRSHGLLSKFEGHNRSQQRASLAPVNSYYYDSKPKMSFNISETLSRLLANPIAVILLVVIVSYAL
SYLLGNVLKAGGGIGGLVEMLVALVMSYGLTYFFSERNRYFIIRGTVIFFVSLIILIILIFV

Sequences:

>Translated_302_residues
MEKPQLINFIAKVMEDSGFKVYKNFKTSQRVIDIYAILPTTIGDFGVVVACKNYDKNFEVGVDVLRDMERVAESLKASKV
AIIASSSFTNQATNYALRKNIKLVDRDDLVELAKKYQDKTETQSTLDVGKEEEVANEDYYDYSYDSDDMDYLMRKQDEKE
FIYNSSNSLHAYDNSHRSHGLLSKFEGHNRSQQRASLAPVNSYYYDSKPKMSFNISETLSRLLANPIAVILLVVIVSYAL
SYLLGNVLKAGGGIGGLVEMLVALVMSYGLTYFFSERNRYFIIRGTVIFFVSLIILIILIFV
>Mature_302_residues
MEKPQLINFIAKVMEDSGFKVYKNFKTSQRVIDIYAILPTTIGDFGVVVACKNYDKNFEVGVDVLRDMERVAESLKASKV
AIIASSSFTNQATNYALRKNIKLVDRDDLVELAKKYQDKTETQSTLDVGKEEEVANEDYYDYSYDSDDMDYLMRKQDEKE
FIYNSSNSLHAYDNSHRSHGLLSKFEGHNRSQQRASLAPVNSYYYDSKPKMSFNISETLSRLLANPIAVILLVVIVSYAL
SYLLGNVLKAGGGIGGLVEMLVALVMSYGLTYFFSERNRYFIIRGTVIFFVSLIILIILIFV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34291; Mature: 34291

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKPQLINFIAKVMEDSGFKVYKNFKTSQRVIDIYAILPTTIGDFGVVVACKNYDKNFEV
CCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
GVDVLRDMERVAESLKASKVAIIASSSFTNQATNYALRKNIKLVDRDDLVELAKKYQDKT
HHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCCCEECHHHHHHHHHHHHHHH
ETQSTLDVGKEEEVANEDYYDYSYDSDDMDYLMRKQDEKEFIYNSSNSLHAYDNSHRSHG
HHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCEECCCCCCCCCC
LLSKFEGHNRSQQRASLAPVNSYYYDSKPKMSFNISETLSRLLANPIAVILLVVIVSYAL
HHHHHCCCCCHHHHHHCCCCHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
SYLLGNVLKAGGGIGGLVEMLVALVMSYGLTYFFSERNRYFIIRGTVIFFVSLIILIILI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHEEEECCCEEEEEECHHHHHHHHHHHHHHH
FV
HC
>Mature Secondary Structure
MEKPQLINFIAKVMEDSGFKVYKNFKTSQRVIDIYAILPTTIGDFGVVVACKNYDKNFEV
CCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
GVDVLRDMERVAESLKASKVAIIASSSFTNQATNYALRKNIKLVDRDDLVELAKKYQDKT
HHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCCCEECHHHHHHHHHHHHHHH
ETQSTLDVGKEEEVANEDYYDYSYDSDDMDYLMRKQDEKEFIYNSSNSLHAYDNSHRSHG
HHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCEECCCCCCCCCC
LLSKFEGHNRSQQRASLAPVNSYYYDSKPKMSFNISETLSRLLANPIAVILLVVIVSYAL
HHHHHCCCCCHHHHHHCCCCHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
SYLLGNVLKAGGGIGGLVEMLVALVMSYGLTYFFSERNRYFIIRGTVIFFVSLIILIILI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHEEEECCCEEEEEECHHHHHHHHHHHHHHH
FV
HC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA