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The map label for this gene is ychF [C]

Identifier: 148643224

GI number: 148643224

Start: 1141736

End: 1142926

Strand: Reverse

Name: ychF [C]

Synonym: Msm_1164

Alternate gene names: 148643224

Gene position: 1142926-1141736 (Counterclockwise)

Preceding gene: 148643230

Following gene: 148643220

Centisome position: 61.67

GC content: 33.92

Gene sequence:

>1191_bases
ATGCTTCAAATTGCAGTTACTGGAAAACCAAATGTTGGAAAATCTTCATTCTTTAACTCTGCAACTTCTTCAAGCGTGGA
AATGGCTAATTATCCATTTACTACTATTGATGCTAATAAAGCAGTTGCTCATGTTATTAGTGAATGTCCTTGTAAAGAAT
TGAATGTTACTTGTAATCCTAGAAATTCCATATGTATTGATGGAAAAAGATTGTTGCCTGTTGAATTAATAGATGTTGCA
GGACTTGTTCCTGGAGCTCATGAAGGTAAGGGATTGGGTAATCAATTTTTAGATGATTTGATGCAGGCTAAAGTTTTAAT
ACATGTTATTGATGCTTCTGGATCCACCGATGCTGAAGGACAAAGTGTAGAAGCCGGATCTCATGACCCTTTAGATGATA
TTGAATTTTTAGAAGATGAAATCGTAATGTGGATGTATGGAATTCTTAACAGAAACTGGGTCAGACTTGTACGTAAAATT
GAAGCTGAAAAATTAGACATAGCTAAAGTGATTTTTGACCAGTTGTCTGGTACTGGAATAACTCTGGAAGATATTATTGA
AGCTAAAAGGAAAGTTAATCCGGATTATACCAAATGGGAAAAAGAAGATTTCATGGAACTTATTCGTAATATATTGCATA
TAGCTAAACCAATGCTTATTGTGGCTAATAAGGCTGATTTGCCAACTGCTGAGGAAAACATTAAAAGAATGCAGGAAAAA
TATCCTTATGTTATACCTGCATCTGCAGAATCTGAAATAGCTTTAGTCAAAGCAGCTGAAGCAGGACTGATTAGTTATAC
TCCTGGAGATTCTGACTTTGAAATTTTAGAAAAAGATAAATTGTCAGATAATCAGCTTAAAGCTTTAGAGTATATTAAAG
TTAATATTTTAGAAAAATACGGGGGAACAGGTATTCAAACAGCATTAAATGAAGCTATATTTGGTTTGCTTAATATGATT
GTAGTTTATCCGGTTCAGGATGAACACAAATACACAGACCAAAAGGGAAATGTTTTACCTGATGGAATTTTAGTGCCTAA
AGGTGCGGTTCCTAAAGAATTGGCTTATCTTGTTCATTCGGATATTGGTGATAACTTTATGCATGCAGTAGATGCTCGTA
AAAATATGAGAATTGCTGCAGATTATGAATTGCAGGATAAGGATGTTATAAGTATTGTTACAAGAGGTTAA

Upstream 100 bases:

>100_bases
GTTTATTGCCATCCATGTTATTTCACTTATATTTTTGTATTAGATTTATATAATTTAAATCTTAAATATATAATTAATTA
TTTATTTTTATTGTGATATT

Downstream 100 bases:

>100_bases
CTGCCTCTTTATGTAATATCTTTTTGAATTTGTGCATAAATCTCTTTTTTAACACTTTCAGGTTCATCTAATTCATTTAA
AATTTTTCTTAAAGTATTCC

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MLQIAVTGKPNVGKSSFFNSATSSSVEMANYPFTTIDANKAVAHVISECPCKELNVTCNPRNSICIDGKRLLPVELIDVA
GLVPGAHEGKGLGNQFLDDLMQAKVLIHVIDASGSTDAEGQSVEAGSHDPLDDIEFLEDEIVMWMYGILNRNWVRLVRKI
EAEKLDIAKVIFDQLSGTGITLEDIIEAKRKVNPDYTKWEKEDFMELIRNILHIAKPMLIVANKADLPTAEENIKRMQEK
YPYVIPASAESEIALVKAAEAGLISYTPGDSDFEILEKDKLSDNQLKALEYIKVNILEKYGGTGIQTALNEAIFGLLNMI
VVYPVQDEHKYTDQKGNVLPDGILVPKGAVPKELAYLVHSDIGDNFMHAVDARKNMRIAADYELQDKDVISIVTRG

Sequences:

>Translated_396_residues
MLQIAVTGKPNVGKSSFFNSATSSSVEMANYPFTTIDANKAVAHVISECPCKELNVTCNPRNSICIDGKRLLPVELIDVA
GLVPGAHEGKGLGNQFLDDLMQAKVLIHVIDASGSTDAEGQSVEAGSHDPLDDIEFLEDEIVMWMYGILNRNWVRLVRKI
EAEKLDIAKVIFDQLSGTGITLEDIIEAKRKVNPDYTKWEKEDFMELIRNILHIAKPMLIVANKADLPTAEENIKRMQEK
YPYVIPASAESEIALVKAAEAGLISYTPGDSDFEILEKDKLSDNQLKALEYIKVNILEKYGGTGIQTALNEAIFGLLNMI
VVYPVQDEHKYTDQKGNVLPDGILVPKGAVPKELAYLVHSDIGDNFMHAVDARKNMRIAADYELQDKDVISIVTRG
>Mature_396_residues
MLQIAVTGKPNVGKSSFFNSATSSSVEMANYPFTTIDANKAVAHVISECPCKELNVTCNPRNSICIDGKRLLPVELIDVA
GLVPGAHEGKGLGNQFLDDLMQAKVLIHVIDASGSTDAEGQSVEAGSHDPLDDIEFLEDEIVMWMYGILNRNWVRLVRKI
EAEKLDIAKVIFDQLSGTGITLEDIIEAKRKVNPDYTKWEKEDFMELIRNILHIAKPMLIVANKADLPTAEENIKRMQEK
YPYVIPASAESEIALVKAAEAGLISYTPGDSDFEILEKDKLSDNQLKALEYIKVNILEKYGGTGIQTALNEAIFGLLNMI
VVYPVQDEHKYTDQKGNVLPDGILVPKGAVPKELAYLVHSDIGDNFMHAVDARKNMRIAADYELQDKDVISIVTRG

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=142, Percent_Identity=37.3239436619718, Blast_Score=86, Evalue=4e-17,
Organism=Escherichia coli, GI1787454, Length=160, Percent_Identity=33.125, Blast_Score=86, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6321649, Length=372, Percent_Identity=37.0967741935484, Blast_Score=234, Evalue=2e-62,
Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=25.065963060686, Blast_Score=83, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6319499, Length=145, Percent_Identity=33.7931034482759, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24640873, Length=393, Percent_Identity=25.4452926208651, Blast_Score=85, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24640877, Length=393, Percent_Identity=25.4452926208651, Blast_Score=85, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24640875, Length=393, Percent_Identity=25.4452926208651, Blast_Score=85, Evalue=9e-17,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 43757; Mature: 43757

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIAVTGKPNVGKSSFFNSATSSSVEMANYPFTTIDANKAVAHVISECPCKELNVTCNP
CEEEEECCCCCCCHHHHCCCCCCCCEEECCCCEEEECCHHHHHHHHHHCCCCCCCEEECC
RNSICIDGKRLLPVELIDVAGLVPGAHEGKGLGNQFLDDLMQAKVLIHVIDASGSTDAEG
CCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCC
QSVEAGSHDPLDDIEFLEDEIVMWMYGILNRNWVRLVRKIEAEKLDIAKVIFDQLSGTGI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TLEDIIEAKRKVNPDYTKWEKEDFMELIRNILHIAKPMLIVANKADLPTAEENIKRMQEK
CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHH
YPYVIPASAESEIALVKAAEAGLISYTPGDSDFEILEKDKLSDNQLKALEYIKVNILEKY
CCEEEECCCCCCEEEEEECCCCEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GGTGIQTALNEAIFGLLNMIVVYPVQDEHKYTDQKGNVLPDGILVPKGAVPKELAYLVHS
CCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHH
DIGDNFMHAVDARKNMRIAADYELQDKDVISIVTRG
CCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECC
>Mature Secondary Structure
MLQIAVTGKPNVGKSSFFNSATSSSVEMANYPFTTIDANKAVAHVISECPCKELNVTCNP
CEEEEECCCCCCCHHHHCCCCCCCCEEECCCCEEEECCHHHHHHHHHHCCCCCCCEEECC
RNSICIDGKRLLPVELIDVAGLVPGAHEGKGLGNQFLDDLMQAKVLIHVIDASGSTDAEG
CCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCC
QSVEAGSHDPLDDIEFLEDEIVMWMYGILNRNWVRLVRKIEAEKLDIAKVIFDQLSGTGI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TLEDIIEAKRKVNPDYTKWEKEDFMELIRNILHIAKPMLIVANKADLPTAEENIKRMQEK
CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHH
YPYVIPASAESEIALVKAAEAGLISYTPGDSDFEILEKDKLSDNQLKALEYIKVNILEKY
CCEEEECCCCCCEEEEEECCCCEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GGTGIQTALNEAIFGLLNMIVVYPVQDEHKYTDQKGNVLPDGILVPKGAVPKELAYLVHS
CCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHH
DIGDNFMHAVDARKNMRIAADYELQDKDVISIVTRG
CCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]