Click here to switch to the map view.

The map label for this gene is frhD [H]

Identifier: 148643183

GI number: 148643183

Start: 1103224

End: 1103697

Strand: Reverse

Name: frhD [H]

Synonym: Msm_1123

Alternate gene names: 148643183

Gene position: 1103697-1103224 (Counterclockwise)

Preceding gene: 148643184

Following gene: 148643182

Centisome position: 59.56

GC content: 35.65

Gene sequence:

>474_bases
ATGCCTTATCATGCAGAGACAATCGTAGTGGGATGCGGAAATATTTTATTTAAAGATGATGGTTTTGGACCATTTGTTAT
TCATAAATTAGAAGAATATTTCGAAGACAAAGAGATGCCTGACGAAGTTATGTTTATTGATGCTGGAACCGGAGCAACAC
ACTTTATTTTTTCTCTTCCTGATGAATATTGGAAAAAAGTTATTGTAATTGATGTTGTTGAGTTTGATGCAGAACCAGGG
ACTGTTAAAATATTTAGCCCTTATGACATGCCTAGAGGAAAATATGAAAATGTTCATTCCTGGCCTGTTGAAGAGCCTCT
TCACGAGCTTGCTAAAGATTGTGAGGTGATTATTGTTGGATGCAAACCTCAAGAGATTTCCTCTCCTGATGTTGAAATGG
GTTTAACTGAACCTGTTGAAAAGGCAATTCCTGAAGCTATGGATATTATTTTAAAAGAAATCGGGGTAAAATAA

Upstream 100 bases:

>100_bases
TGTTTATCATGTGCAACTCACGTAATGGTAGTTGATGATGAGGATAAAAGTATACTTAAAAACGATATGGTGAGAATATA
AGGAGCTAGGAGGAAATTAT

Downstream 100 bases:

>100_bases
TGTTTGATAAAATTAGAAAAGCTTTTGGTGGTTCTGAAAAACCTAAAGCAGAAACCAAACAAAAAATAGAATCTGCTCCT
GAAGTTGAAGAAACAGCAGC

Product: coenzyme F420-reducing hydrogenase, delta subunit, FrhD

Products: reduced coenzyme F420

Alternate protein names: Putative coenzyme F420 hydrogenase-processing subunit [H]

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MPYHAETIVVGCGNILFKDDGFGPFVIHKLEEYFEDKEMPDEVMFIDAGTGATHFIFSLPDEYWKKVIVIDVVEFDAEPG
TVKIFSPYDMPRGKYENVHSWPVEEPLHELAKDCEVIIVGCKPQEISSPDVEMGLTEPVEKAIPEAMDIILKEIGVK

Sequences:

>Translated_157_residues
MPYHAETIVVGCGNILFKDDGFGPFVIHKLEEYFEDKEMPDEVMFIDAGTGATHFIFSLPDEYWKKVIVIDVVEFDAEPG
TVKIFSPYDMPRGKYENVHSWPVEEPLHELAKDCEVIIVGCKPQEISSPDVEMGLTEPVEKAIPEAMDIILKEIGVK
>Mature_156_residues
PYHAETIVVGCGNILFKDDGFGPFVIHKLEEYFEDKEMPDEVMFIDAGTGATHFIFSLPDEYWKKVIVIDVVEFDAEPGT
VKIFSPYDMPRGKYENVHSWPVEEPLHELAKDCEVIIVGCKPQEISSPDVEMGLTEPVEKAIPEAMDIILKEIGVK

Specific function: Protease Involved In The C-Terminal Processing Of Hyab, The Large Subunit Of Hydrogenase 1 (Potential). [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004411
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 1.12.98.1

Molecular weight: Translated: 17732; Mature: 17600

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYHAETIVVGCGNILFKDDGFGPFVIHKLEEYFEDKEMPDEVMFIDAGTGATHFIFSLP
CCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECC
DEYWKKVIVIDVVEFDAEPGTVKIFSPYDMPRGKYENVHSWPVEEPLHELAKDCEVIIVG
HHHCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEC
CKPQEISSPDVEMGLTEPVEKAIPEAMDIILKEIGVK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PYHAETIVVGCGNILFKDDGFGPFVIHKLEEYFEDKEMPDEVMFIDAGTGATHFIFSLP
CCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECC
DEYWKKVIVIDVVEFDAEPGTVKIFSPYDMPRGKYENVHSWPVEEPLHELAKDCEVIIVG
HHHCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEC
CKPQEISSPDVEMGLTEPVEKAIPEAMDIILKEIGVK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2; coenzyme F420

Specific reaction: H2 + coenzyme F420 = reduced coenzyme F420

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2207102; 9371463 [H]