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The map label for this gene is rpl4lp

Identifier: 148642821

GI number: 148642821

Start: 720800

End: 721564

Strand: Reverse

Name: rpl4lp

Synonym: Msm_0761

Alternate gene names: 148642821

Gene position: 721564-720800 (Counterclockwise)

Preceding gene: 148642822

Following gene: 148642820

Centisome position: 38.94

GC content: 37.39

Gene sequence:

>765_bases
ATGAAAGCAAATGTTTATTCAATGGAAGGGGAAGTTAAAGAAGAAATTGAACTTCCAGCTATTTTTAATGAAGAATACAG
GCCTGATTTAATAAAAAGGGCTGTTATTTCAGCACAAACCGCTAGAGTACAACCATGGGGTAATGACCCTGAAGCAGGTA
AAAGAACTTCTGCAAAAGGTTGGGGATCTGGTAGAGGTACAGCTAGAGTACCTAGGATCAAAAACGGTTCCAAAGCAGCA
TTCGTACCAATGGCTGTTGGTGGTAGACGTGCACATCCTACAAGAGCTGAAAAAAATCATCACGAAAAAATCAACATAAA
AGAAAGAAGATTTGCAATCAGGTCTGCTGTAGCAGCTACTGCAAATAAAGAACTTGTTGAAAACAGAGGTCACAGATTAG
GAGACCTTGAACAAGTACCTATTATTGTTGAAGATGATATTTGTTCTGTAAAAACTACTAAACAAACTCGTGAAATTTTC
CAAAACTTAGGAGTTTACGACGACATTACCCGTGCTAAAGAAGGTAAAAGAATAAGAGCGGGTAGGGGTAAAACTAGAGG
AAGAAAATACAAAAAAGTAAAAGGACCTCTTTTAGTAGTCGGTGAAGATAACGGTATCAAATTAGGTGCAAGAAACCATG
CTGGTGTAGATGTAGTAACTGTTGAAAACTTAAATGCAGAATTATTAGCACCAGGTACTCACCCAGGAAGACTCACTATT
TTCACTAAATCAGCTGTTGAAAAATTAGGAGGTTTATTCCAATAA

Upstream 100 bases:

>100_bases
GATTGGTTATTTTAAGACAACCTATTAGGCCTAATAACAAATCTGAGGACATGCCTCAAATAAACTACATAAGTACAAAA
TCTAAACAAGGGGTCTAATC

Downstream 100 bases:

>100_bases
TTTTGGATAAATAAGGTGATTATTATGGATTCATACTCAATTATTATTAAACCTCATGTTACTGAAAAAACCATGAATTT
AATCGATAAAAACAATGAGA

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKANVYSMEGEVKEEIELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGSKAA
FVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIF
QNLGVYDDITRAKEGKRIRAGRGKTRGRKYKKVKGPLLVVGEDNGIKLGARNHAGVDVVTVENLNAELLAPGTHPGRLTI
FTKSAVEKLGGLFQ

Sequences:

>Translated_254_residues
MKANVYSMEGEVKEEIELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGSKAA
FVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIF
QNLGVYDDITRAKEGKRIRAGRGKTRGRKYKKVKGPLLVVGEDNGIKLGARNHAGVDVVTVENLNAELLAPGTHPGRLTI
FTKSAVEKLGGLFQ
>Mature_254_residues
MKANVYSMEGEVKEEIELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGSKAA
FVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIF
QNLGVYDDITRAKEGKRIRAGRGKTRGRKYKKVKGPLLVVGEDNGIKLGARNHAGVDVVTVENLNAELLAPGTHPGRLTI
FTKSAVEKLGGLFQ

Specific function: Forms part of the polypeptide exit tunnel

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family

Homologues:

Organism=Homo sapiens, GI16579885, Length=256, Percent_Identity=37.5, Blast_Score=166, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI17508669, Length=255, Percent_Identity=36.8627450980392, Blast_Score=171, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6319505, Length=258, Percent_Identity=37.2093023255814, Blast_Score=160, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6320215, Length=258, Percent_Identity=37.2093023255814, Blast_Score=160, Evalue=1e-40,
Organism=Drosophila melanogaster, GI24650747, Length=257, Percent_Identity=35.7976653696498, Blast_Score=169, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL4_METS3 (A5UL88)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273334.1
- ProteinModelPortal:   A5UL88
- SMR:   A5UL88
- STRING:   A5UL88
- GeneID:   5215996
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0761
- eggNOG:   arNOG06979
- HOGENOM:   HBG316531
- OMA:   KMRGRRY
- ProtClustDB:   PRK04042
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01328_A
- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970
- TIGRFAMs:   TIGR03672

Pfam domain/function: PF00573 Ribosomal_L4; SSF52166 Ribosomal_L4/L1E

EC number: NA

Molecular weight: Translated: 27972; Mature: 27972

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKANVYSMEGEVKEEIELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKG
CCCCEECCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCC
WGSGRGTARVPRIKNGSKAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAAT
CCCCCCCEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEGKRIRA
HHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEC
GRGKTRGRKYKKVKGPLLVVGEDNGIKLGARNHAGVDVVTVENLNAELLAPGTHPGRLTI
CCCCCCCCHHHCCCCCEEEEECCCCEEECCCCCCCEEEEEEECCCCEEECCCCCCCEEEE
FTKSAVEKLGGLFQ
EEHHHHHHHCCCCC
>Mature Secondary Structure
MKANVYSMEGEVKEEIELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKG
CCCCEECCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCC
WGSGRGTARVPRIKNGSKAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAAT
CCCCCCCEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEGKRIRA
HHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEC
GRGKTRGRKYKKVKGPLLVVGEDNGIKLGARNHAGVDVVTVENLNAELLAPGTHPGRLTI
CCCCCCCCHHHCCCCCEEEEECCCCEEECCCCCCCEEEEEEECCCCEEECCCCCCCEEEE
FTKSAVEKLGGLFQ
EEHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA