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The map label for this gene is rpl23p

Identifier: 148642820

GI number: 148642820

Start: 720515

End: 720775

Strand: Reverse

Name: rpl23p

Synonym: Msm_0760

Alternate gene names: 148642820

Gene position: 720775-720515 (Counterclockwise)

Preceding gene: 148642821

Following gene: 148642819

Centisome position: 38.89

GC content: 30.65

Gene sequence:

>261_bases
ATGGATTCATACTCAATTATTATTAAACCTCATGTTACTGAAAAAACCATGAATTTAATCGATAAAAACAATGAGATTAC
TTTTGTTGTAAAACGTGACGCTAACAAAGGTCAAATTAAAAGGGCTTTTGAAGAGTTATACGAAGAAAAAGTAGCTAGAG
TAACTACTCATATCACTCCTCGTGGTAATAAAGTAGCATTTATTAAACTTGTTGAAGAAGAAATGGCAGAAGAACTTGCT
GTCAAAATAGGAGTATTCTAA

Upstream 100 bases:

>100_bases
ACCAGGTACTCACCCAGGAAGACTCACTATTTTCACTAAATCAGCTGTTGAAAAATTAGGAGGTTTATTCCAATAATTTT
GGATAAATAAGGTGATTATT

Downstream 100 bases:

>100_bases
GGAGGAATTATAATGGGAAAACGATTAATAATTCAAAGAAGAGGAAGAGGAACTCCTGCTCACCGTGTTGCTTCTCATCG
TTTTAAAGATAAAATCAGAT

Product: 50S ribosomal protein L23P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MDSYSIIIKPHVTEKTMNLIDKNNEITFVVKRDANKGQIKRAFEELYEEKVARVTTHITPRGNKVAFIKLVEEEMAEELA
VKIGVF

Sequences:

>Translated_86_residues
MDSYSIIIKPHVTEKTMNLIDKNNEITFVVKRDANKGQIKRAFEELYEEKVARVTTHITPRGNKVAFIKLVEEEMAEELA
VKIGVF
>Mature_86_residues
MDSYSIIIKPHVTEKTMNLIDKNNEITFVVKRDANKGQIKRAFEELYEEKVARVTTHITPRGNKVAFIKLVEEEMAEELA
VKIGVF

Specific function: Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

Organism=Homo sapiens, GI17105394, Length=85, Percent_Identity=43.5294117647059, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508675, Length=84, Percent_Identity=41.6666666666667, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17569427, Length=85, Percent_Identity=42.3529411764706, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324445, Length=84, Percent_Identity=39.2857142857143, Blast_Score=63, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24655502, Length=86, Percent_Identity=39.5348837209302, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_METS3 (A5UL87)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273333.1
- ProteinModelPortal:   A5UL87
- SMR:   A5UL87
- STRING:   A5UL87
- GeneID:   5215995
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0760
- eggNOG:   arNOG12677
- HOGENOM:   HBG439330
- OMA:   RGEKKAY
- ProtClustDB:   PRK14548
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_A
- InterPro:   IPR012677
- InterPro:   IPR019985
- InterPro:   IPR012678
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330
- TIGRFAMs:   TIGR03636

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 9908; Mature: 9908

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSYSIIIKPHVTEKTMNLIDKNNEITFVVKRDANKGQIKRAFEELYEEKVARVTTHITP
CCCCEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC
RGNKVAFIKLVEEEMAEELAVKIGVF
CCCEEEEEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDSYSIIIKPHVTEKTMNLIDKNNEITFVVKRDANKGQIKRAFEELYEEKVARVTTHITP
CCCCEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC
RGNKVAFIKLVEEEMAEELAVKIGVF
CCCEEEEEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA