| Definition | Methanobrevibacter smithii ATCC 35061 chromosome, complete genome. |
|---|---|
| Accession | NC_009515 |
| Length | 1,853,160 |
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The map label for this gene is serB [C]
Identifier: 148642779
GI number: 148642779
Start: 688577
End: 690166
Strand: Reverse
Name: serB [C]
Synonym: Msm_0719
Alternate gene names: 148642779
Gene position: 690166-688577 (Counterclockwise)
Preceding gene: 148642780
Following gene: 148642778
Centisome position: 37.24
GC content: 31.82
Gene sequence:
>1590_bases TTGATTAAACTTGTAGTATTTGACTTAGATAACGTTATTATTGATGGAGAAGCAATTGATGAGATAGGGAAATTAGCAAA TGTTGAAGATGAAATAGCTGAAATTACTGAAAAAGCTATGCAAGGTGAAATCGACTTTGAAACTTCTATTAAAGATAGAG TTAAACTTCTTGAAGGAACTTCCATTGAAGATATTCAAAAAGTTGCTGATGAACTTCCATTAATGAATGGTGCTGAAGAT ACCATCGCACGTTTAAAAGAAGAAGGATTAGATGTAGCTATTATTAGTGGCAGTTTTGATGTTGTTGCACAAACCGTTAA AGACAAACTCGGTATTGAAAATGCATACACTAATAGTTTCACTGTTGAAGACGGTAAATTGACTGGTGAAGTAACTGGAC CTTTAGTATCTGGTTCTAAATTGGACGTATTAAAAGAACATATTGAAGGTAATGACACTTCTTTAGAAGAAGTTGTTGCA GTTGGAGATGGAGCTAACGACATTTCCATGATCGAATCAGCAGGTATTGGAATTGCTTTCAATGCAAAAGATTCTGTTAA AGAAAAAGCTGATGTTGTAGTAGATGAAAAAGACTTAACCAAAGTCTTAGATGAAATTATTAATCAATTATCCACTGATG TTGTTGAAAATGACGAAACTGAACAAGTAGAAGAAGCAGAAGATGCTGAAGAATCTACTGAAGAAGCTGAAAAACCTAAA AAAGACGGTCTTCCTGAATCTGATTTTGTTTTAGCTGACACCATGGAAGGTGTAAGAAAACAAAAAGATGAAAAAGAAGC TGAAATAGCTAAAGTTACTGAAGAAAGAGAAGAATTCAACAGGATAGCTAAAGAACAACGTAAAATTCGTGATGAATTAA ACGCATCATTAAAAGAAAACTTAAACAAAGCTATTGAATTCAGAAATGAACGTAACGAAATCAACAAAAAAGTTGAAGAA GCTAAAAAAGCACGTAACGAAGCTAACAACAAAATTAGAAACTTAGAATGGTCTTCTGGTAAACGTGACAAAATTAAAAT AGAAAATGAGATTAAAAAGATTGATAAAATCATTGAAACTCGTGTTTTAGATATTAAAAAAGAAAATCAACTTGTTAAAA ATGCAAACGATTTAAGAAAACAGTTAATGGAAATTCATGAAGATGAATCCGTTAAAGGTGAAGCACAAGAGCTTAAAAAA TTATCTGAAGAAGAACACGAAAAAGTTATTGACTTTTCTGAAAAAGCTCAAGCAGCTCACGAAGAAATGCTCAAATTCTT CAGAAAAACTGATGATATCAGAACTGCAGCTGATGAAGCTCACAAAAAATTCATCGAAGCTCGTAAAAATGCTTCTGCAA AACATGAAGAGTTCAAATCCATTTTAAGCGATATTCATGTTATCAATAAAAAATTAGGTTCCAACAGACCTAGAAAAAGA AGATCTGCTAGTAACAAATCTTCCTCATCAAACGGTAACAAAAATCGTGAAGAAAAAGAAAGAGCTGAAGAAATCTTCGA TAAATTCAAACACGGTGGAAAATTATCTACTGAAGAGCTCTTACTTTTACAAAAATACAATATTAATTAA
Upstream 100 bases:
>100_bases TGTTTGTACTGGAGCTAAAACACGTAGCGACGCTAAATTAGGTGTCGAAAGAGCTTACGATAGATTAAGTGAGCTAGATT TAATATAATTGGTGGTATGA
Downstream 100 bases:
>100_bases GTAATTTACTGAAATTACTTTAATTTTTATTTATTTCTTTTTTTAAGGTAATATCATGTCTGATGAAGAAAAAATTGAAA CCTGTTTTTTATGCGGCAAG
Product: phosphoserine phosphatase SerB
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 529; Mature: 529
Protein sequence:
>529_residues MIKLVVFDLDNVIIDGEAIDEIGKLANVEDEIAEITEKAMQGEIDFETSIKDRVKLLEGTSIEDIQKVADELPLMNGAED TIARLKEEGLDVAIISGSFDVVAQTVKDKLGIENAYTNSFTVEDGKLTGEVTGPLVSGSKLDVLKEHIEGNDTSLEEVVA VGDGANDISMIESAGIGIAFNAKDSVKEKADVVVDEKDLTKVLDEIINQLSTDVVENDETEQVEEAEDAEESTEEAEKPK KDGLPESDFVLADTMEGVRKQKDEKEAEIAKVTEEREEFNRIAKEQRKIRDELNASLKENLNKAIEFRNERNEINKKVEE AKKARNEANNKIRNLEWSSGKRDKIKIENEIKKIDKIIETRVLDIKKENQLVKNANDLRKQLMEIHEDESVKGEAQELKK LSEEEHEKVIDFSEKAQAAHEEMLKFFRKTDDIRTAADEAHKKFIEARKNASAKHEEFKSILSDIHVINKKLGSNRPRKR RSASNKSSSSNGNKNREEKERAEEIFDKFKHGGKLSTEELLLLQKYNIN
Sequences:
>Translated_529_residues MIKLVVFDLDNVIIDGEAIDEIGKLANVEDEIAEITEKAMQGEIDFETSIKDRVKLLEGTSIEDIQKVADELPLMNGAED TIARLKEEGLDVAIISGSFDVVAQTVKDKLGIENAYTNSFTVEDGKLTGEVTGPLVSGSKLDVLKEHIEGNDTSLEEVVA VGDGANDISMIESAGIGIAFNAKDSVKEKADVVVDEKDLTKVLDEIINQLSTDVVENDETEQVEEAEDAEESTEEAEKPK KDGLPESDFVLADTMEGVRKQKDEKEAEIAKVTEEREEFNRIAKEQRKIRDELNASLKENLNKAIEFRNERNEINKKVEE AKKARNEANNKIRNLEWSSGKRDKIKIENEIKKIDKIIETRVLDIKKENQLVKNANDLRKQLMEIHEDESVKGEAQELKK LSEEEHEKVIDFSEKAQAAHEEMLKFFRKTDDIRTAADEAHKKFIEARKNASAKHEEFKSILSDIHVINKKLGSNRPRKR RSASNKSSSSNGNKNREEKERAEEIFDKFKHGGKLSTEELLLLQKYNIN >Mature_529_residues MIKLVVFDLDNVIIDGEAIDEIGKLANVEDEIAEITEKAMQGEIDFETSIKDRVKLLEGTSIEDIQKVADELPLMNGAED TIARLKEEGLDVAIISGSFDVVAQTVKDKLGIENAYTNSFTVEDGKLTGEVTGPLVSGSKLDVLKEHIEGNDTSLEEVVA VGDGANDISMIESAGIGIAFNAKDSVKEKADVVVDEKDLTKVLDEIINQLSTDVVENDETEQVEEAEDAEESTEEAEKPK KDGLPESDFVLADTMEGVRKQKDEKEAEIAKVTEEREEFNRIAKEQRKIRDELNASLKENLNKAIEFRNERNEINKKVEE AKKARNEANNKIRNLEWSSGKRDKIKIENEIKKIDKIIETRVLDIKKENQLVKNANDLRKQLMEIHEDESVKGEAQELKK LSEEEHEKVIDFSEKAQAAHEEMLKFFRKTDDIRTAADEAHKKFIEARKNASAKHEEFKSILSDIHVINKKLGSNRPRKR RSASNKSSSSNGNKNREEKERAEEIFDKFKHGGKLSTEELLLLQKYNIN
Specific function: Unknown
COG id: COG1340
COG function: function code S; Uncharacterized archaeal coiled-coil protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=218, Percent_Identity=30.2752293577982, Blast_Score=90, Evalue=4e-18, Organism=Escherichia coli, GI1790849, Length=201, Percent_Identity=41.7910447761194, Blast_Score=157, Evalue=2e-39, Organism=Caenorhabditis elegans, GI115534456, Length=213, Percent_Identity=29.1079812206573, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115534454, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6321647, Length=217, Percent_Identity=36.405529953917, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI24661601, Length=191, Percent_Identity=29.8429319371728, Blast_Score=72, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 59713; Mature: 59713
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKLVVFDLDNVIIDGEAIDEIGKLANVEDEIAEITEKAMQGEIDFETSIKDRVKLLEGT CEEEEEEECCCEEECCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC SIEDIQKVADELPLMNGAEDTIARLKEEGLDVAIISGSFDVVAQTVKDKLGIENAYTNSF CHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCE TVEDGKLTGEVTGPLVSGSKLDVLKEHIEGNDTSLEEVVAVGDGANDISMIESAGIGIAF EEECCCEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHCCCCEEE NAKDSVKEKADVVVDEKDLTKVLDEIINQLSTDVVENDETEQVEEAEDAEESTEEAEKPK CCCHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCH KDGLPESDFVLADTMEGVRKQKDEKEAEIAKVTEEREEFNRIAKEQRKIRDELNASLKEN HCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNKAIEFRNERNEINKKVEEAKKARNEANNKIRNLEWSSGKRDKIKIENEIKKIDKIIET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH RVLDIKKENQLVKNANDLRKQLMEIHEDESVKGEAQELKKLSEEEHEKVIDFSEKAQAAH HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH EEMLKFFRKTDDIRTAADEAHKKFIEARKNASAKHEEFKSILSDIHVINKKLGSNRPRKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH RSASNKSSSSNGNKNREEKERAEEIFDKFKHGGKLSTEELLLLQKYNIN HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure MIKLVVFDLDNVIIDGEAIDEIGKLANVEDEIAEITEKAMQGEIDFETSIKDRVKLLEGT CEEEEEEECCCEEECCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC SIEDIQKVADELPLMNGAEDTIARLKEEGLDVAIISGSFDVVAQTVKDKLGIENAYTNSF CHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCE TVEDGKLTGEVTGPLVSGSKLDVLKEHIEGNDTSLEEVVAVGDGANDISMIESAGIGIAF EEECCCEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHCCCCEEE NAKDSVKEKADVVVDEKDLTKVLDEIINQLSTDVVENDETEQVEEAEDAEESTEEAEKPK CCCHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCH KDGLPESDFVLADTMEGVRKQKDEKEAEIAKVTEEREEFNRIAKEQRKIRDELNASLKEN HCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNKAIEFRNERNEINKKVEEAKKARNEANNKIRNLEWSSGKRDKIKIENEIKKIDKIIET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH RVLDIKKENQLVKNANDLRKQLMEIHEDESVKGEAQELKKLSEEEHEKVIDFSEKAQAAH HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH EEMLKFFRKTDDIRTAADEAHKKFIEARKNASAKHEEFKSILSDIHVINKKLGSNRPRKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH RSASNKSSSSNGNKNREEKERAEEIFDKFKHGGKLSTEELLLLQKYNIN HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087; 11342136; 12051918 [H]