BacMap

Definition	Methanobrevibacter smithii ATCC 35061 chromosome, complete genome.
Accession	NC_009515
Length	1,853,160

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The map label for this gene is 148642759

Identifier: 148642759

GI number: 148642759

Start: 672388

End: 673845

Strand: Reverse

Name: 148642759

Synonym: Msm_0699

Alternate gene names: NA

Gene position: 673845-672388 (Counterclockwise)

Preceding gene: 148642760

Following gene: 148642757

Centisome position: 36.36

GC content: 36.21

Gene sequence:

>1458_bases
ATGAATCATGATAATAAAAGCGAGTGGAATTCTTCTCTTGCGTTTTTAATGTCAATGATTGGGGCTGCTGTTGGATTAGG
TAATATATGGCGTTTCAGCTATGTGCTGTACTCCAATGGTGGAGGATCCTTTTTTATTCCTTATTTTGTAGCTATTGGGC
TTCTGGGAATTCCCTTTCTTATTTTGGAATATGGTTTGGGGTTCAAATTCAAAACATCATTTTCAAATCTGCTCCACAAG
ATAAGACCGAGGTTTGAAGTAATAGGATGGATTTTAGGTCTTCTGGCATTTGGTGTTGTAACATATTATATGGTTATTCT
TGCATGGGATATAGTTTATCTTGGAGCAAGTCCGTTTCTGGCATGGGGGGCTGATCCTGCAGGATTTTTCTTAAACTATG
TTGGTGGAGACTCTACAATTTCTGACTGGTCACATCTGATACTTCCGACAGTGGCGGGACTGGTTATTGTATGGGTGATG
ATATGGTTTATTTCAAAAAAAGAGCTGAACTCAGGAATAGGCAAAGTATCCAAAGTGCTGATTCCATTATTGTTTGTTAT
AATGGCAGCTATTGTAATATTTTCCCTGACATTGCCTGGCCATAATTTGGGAATTGAAACACTGCTGACTCCTGACTGGT
CAGTGCTTTTTGATGTAAACATATGGCTTGCTGCATTTTCACAGATTATATTTTCATTAAGTTTGGGAATGGCTATTGCA
CTTACATATGCAAGTTATTTACCTGAAGATTCAAAATTAATCAATAATGTGCTGATTGTAGTTAGTTCAAACTCAGGTTT
TGAGATATTCACTGCATTTGGAGTCTTTTCCATATTGGGTTTCATGTCAGTAACATCAGGCGTTCCGATTGAAAGCCTAA
TCAGACAGGGTACAGGTCTTGTATTTATTGTATTTCCGACAATATTCAATACAATGGGTATAGCAGGTAAGATATTGGGA
CCTCTGTTTTTCCTGGCTATATTATTTGCAGGAATAACTTCTGCTCTGGGATTTTTAGAGCCGTTACTTAATTCTGTATG
TGATAAGTTTGGATTTACCCGTAAAAAATCAGCCAGTATATTATGTGGTGTCGGATTTGTGATTTCAATGTTTTTCACAT
GCGGAATCTCCAGCTATCTTGTGGAAATAGTTGACGGATTTTTGAACCAGTTCGGAATATTGTTTTTAATCGCATTGCAG
TGTATTATATTTGGATGGATTTTAGGAATTGATGATTTAATTGAAGTTGTAAACAAGGATTCTGTAATGCATGTTGGAAA
ACTATGGGTTGCAATCATTAAATATATACTCCCATGTGTAATTTTCATAGTTTGGACATTCGGAATTATTGACCTGATTA
AAACAGGGGGATTTCTGGAACTGGCTGTTGATGTTGTTATTACACTCAGCATTTTAATAGCAAGTGTTATGCTGACAAAA
TTCGAAGATTATAAATAA

Upstream 100 bases:

>100_bases
GGAACCAGTTTACTTAATTCATTGTATCCTCAATGTGATGATTTGGAAATAACACCGGAGGGTACCGGTAAATTGTATTT
TAATTTAACAGGTGATACCA

Downstream 100 bases:

>100_bases
CTGTTAATGACAAATAGTAAGGTGTAATATGGTTTTTTTTAAATCATATTCTAATATATCAACAAAAAAATTTATTTTTT
TGATTCGTTTAAAACCTTCT

Product: SNF family Na(+)-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MNHDNKSEWNSSLAFLMSMIGAAVGLGNIWRFSYVLYSNGGGSFFIPYFVAIGLLGIPFLILEYGLGFKFKTSFSNLLHK
IRPRFEVIGWILGLLAFGVVTYYMVILAWDIVYLGASPFLAWGADPAGFFLNYVGGDSTISDWSHLILPTVAGLVIVWVM
IWFISKKELNSGIGKVSKVLIPLLFVIMAAIVIFSLTLPGHNLGIETLLTPDWSVLFDVNIWLAAFSQIIFSLSLGMAIA
LTYASYLPEDSKLINNVLIVVSSNSGFEIFTAFGVFSILGFMSVTSGVPIESLIRQGTGLVFIVFPTIFNTMGIAGKILG
PLFFLAILFAGITSALGFLEPLLNSVCDKFGFTRKKSASILCGVGFVISMFFTCGISSYLVEIVDGFLNQFGILFLIALQ
CIIFGWILGIDDLIEVVNKDSVMHVGKLWVAIIKYILPCVIFIVWTFGIIDLIKTGGFLELAVDVVITLSILIASVMLTK
FEDYK

Sequences:

>Translated_485_residues
MNHDNKSEWNSSLAFLMSMIGAAVGLGNIWRFSYVLYSNGGGSFFIPYFVAIGLLGIPFLILEYGLGFKFKTSFSNLLHK
IRPRFEVIGWILGLLAFGVVTYYMVILAWDIVYLGASPFLAWGADPAGFFLNYVGGDSTISDWSHLILPTVAGLVIVWVM
IWFISKKELNSGIGKVSKVLIPLLFVIMAAIVIFSLTLPGHNLGIETLLTPDWSVLFDVNIWLAAFSQIIFSLSLGMAIA
LTYASYLPEDSKLINNVLIVVSSNSGFEIFTAFGVFSILGFMSVTSGVPIESLIRQGTGLVFIVFPTIFNTMGIAGKILG
PLFFLAILFAGITSALGFLEPLLNSVCDKFGFTRKKSASILCGVGFVISMFFTCGISSYLVEIVDGFLNQFGILFLIALQ
CIIFGWILGIDDLIEVVNKDSVMHVGKLWVAIIKYILPCVIFIVWTFGIIDLIKTGGFLELAVDVVITLSILIASVMLTK
FEDYK
>Mature_485_residues
MNHDNKSEWNSSLAFLMSMIGAAVGLGNIWRFSYVLYSNGGGSFFIPYFVAIGLLGIPFLILEYGLGFKFKTSFSNLLHK
IRPRFEVIGWILGLLAFGVVTYYMVILAWDIVYLGASPFLAWGADPAGFFLNYVGGDSTISDWSHLILPTVAGLVIVWVM
IWFISKKELNSGIGKVSKVLIPLLFVIMAAIVIFSLTLPGHNLGIETLLTPDWSVLFDVNIWLAAFSQIIFSLSLGMAIA
LTYASYLPEDSKLINNVLIVVSSNSGFEIFTAFGVFSILGFMSVTSGVPIESLIRQGTGLVFIVFPTIFNTMGIAGKILG
PLFFLAILFAGITSALGFLEPLLNSVCDKFGFTRKKSASILCGVGFVISMFFTCGISSYLVEIVDGFLNQFGILFLIALQ
CIIFGWILGIDDLIEVVNKDSVMHVGKLWVAIIKYILPCVIFIVWTFGIIDLIKTGGFLELAVDVVITLSILIASVMLTK
FEDYK

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI7657587, Length=459, Percent_Identity=28.322440087146, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI289191351, Length=487, Percent_Identity=27.5154004106776, Blast_Score=173, Evalue=4e-43,
Organism=Homo sapiens, GI4557046, Length=487, Percent_Identity=27.5154004106776, Blast_Score=173, Evalue=4e-43,
Organism=Homo sapiens, GI289191377, Length=487, Percent_Identity=27.5154004106776, Blast_Score=172, Evalue=5e-43,
Organism=Homo sapiens, GI4507041, Length=481, Percent_Identity=26.4033264033264, Blast_Score=168, Evalue=8e-42,
Organism=Homo sapiens, GI21361581, Length=456, Percent_Identity=27.6315789473684, Blast_Score=167, Evalue=2e-41,
Organism=Homo sapiens, GI134304856, Length=455, Percent_Identity=28.5714285714286, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI171184408, Length=459, Percent_Identity=28.322440087146, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI171184406, Length=459, Percent_Identity=28.322440087146, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI171184404, Length=459, Percent_Identity=28.322440087146, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI188528618, Length=453, Percent_Identity=28.476821192053, Blast_Score=160, Evalue=4e-39,
Organism=Homo sapiens, GI5032097, Length=464, Percent_Identity=28.448275862069, Blast_Score=156, Evalue=4e-38,
Organism=Homo sapiens, GI4507043, Length=459, Percent_Identity=26.1437908496732, Blast_Score=156, Evalue=4e-38,
Organism=Homo sapiens, GI92859670, Length=518, Percent_Identity=25.4826254826255, Blast_Score=152, Evalue=5e-37,
Organism=Homo sapiens, GI218563756, Length=464, Percent_Identity=28.2327586206897, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI197276623, Length=457, Percent_Identity=26.2582056892779, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI54607094, Length=457, Percent_Identity=26.2582056892779, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI67782317, Length=507, Percent_Identity=24.8520710059172, Blast_Score=136, Evalue=5e-32,
Organism=Homo sapiens, GI67782313, Length=507, Percent_Identity=25.0493096646943, Blast_Score=135, Evalue=1e-31,
Organism=Homo sapiens, GI67782315, Length=507, Percent_Identity=25.0493096646943, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI194018524, Length=477, Percent_Identity=26.6247379454927, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI11181770, Length=535, Percent_Identity=24.4859813084112, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI58219014, Length=307, Percent_Identity=28.3387622149837, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI33354281, Length=319, Percent_Identity=26.0188087774295, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI289191353, Length=301, Percent_Identity=26.578073089701, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI51468073, Length=303, Percent_Identity=26.4026402640264, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI12408638, Length=520, Percent_Identity=25, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI218563758, Length=390, Percent_Identity=25.3846153846154, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI300360519, Length=275, Percent_Identity=25.8181818181818, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI6005715, Length=116, Percent_Identity=41.3793103448276, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI21361693, Length=126, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI197276625, Length=110, Percent_Identity=40, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI55749589, Length=310, Percent_Identity=24.5161290322581, Blast_Score=76, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17555248, Length=477, Percent_Identity=27.6729559748428, Blast_Score=170, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI71995588, Length=451, Percent_Identity=27.0509977827051, Blast_Score=147, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17554804, Length=414, Percent_Identity=27.2946859903382, Blast_Score=140, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI25146584, Length=496, Percent_Identity=24.5967741935484, Blast_Score=137, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI133952791, Length=329, Percent_Identity=26.1398176291793, Blast_Score=114, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI71998244, Length=403, Percent_Identity=26.7990074441687, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17569475, Length=455, Percent_Identity=23.7362637362637, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI212642127, Length=285, Percent_Identity=24.5614035087719, Blast_Score=88, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17542050, Length=111, Percent_Identity=36.036036036036, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17535731, Length=113, Percent_Identity=35.3982300884956, Blast_Score=80, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI115534083, Length=274, Percent_Identity=23.7226277372263, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24639514, Length=499, Percent_Identity=28.0561122244489, Blast_Score=181, Evalue=1e-45,
Organism=Drosophila melanogaster, GI221329674, Length=499, Percent_Identity=28.2565130260521, Blast_Score=181, Evalue=1e-45,
Organism=Drosophila melanogaster, GI24639516, Length=519, Percent_Identity=26.9749518304432, Blast_Score=174, Evalue=2e-43,
Organism=Drosophila melanogaster, GI24762620, Length=488, Percent_Identity=28.0737704918033, Blast_Score=170, Evalue=2e-42,
Organism=Drosophila melanogaster, GI281363702, Length=480, Percent_Identity=27.7083333333333, Blast_Score=159, Evalue=4e-39,
Organism=Drosophila melanogaster, GI24582567, Length=446, Percent_Identity=25.3363228699552, Blast_Score=157, Evalue=1e-38,
Organism=Drosophila melanogaster, GI281364136, Length=483, Percent_Identity=26.5010351966874, Blast_Score=156, Evalue=3e-38,
Organism=Drosophila melanogaster, GI45550877, Length=481, Percent_Identity=25.1559251559252, Blast_Score=154, Evalue=1e-37,
Organism=Drosophila melanogaster, GI19921352, Length=491, Percent_Identity=26.2729124236253, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24584353, Length=491, Percent_Identity=26.2729124236253, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24652942, Length=453, Percent_Identity=29.5805739514349, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI17136952, Length=495, Percent_Identity=24.040404040404, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI45551088, Length=453, Percent_Identity=29.5805739514349, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI19921936, Length=454, Percent_Identity=28.4140969162996, Blast_Score=145, Evalue=5e-35,
Organism=Drosophila melanogaster, GI24655079, Length=518, Percent_Identity=26.2548262548263, Blast_Score=145, Evalue=8e-35,
Organism=Drosophila melanogaster, GI281364394, Length=495, Percent_Identity=24.040404040404, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI28574704, Length=495, Percent_Identity=24.040404040404, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI17136950, Length=495, Percent_Identity=24.040404040404, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI28574702, Length=495, Percent_Identity=24.040404040404, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI281365034, Length=484, Percent_Identity=25.8264462809917, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24639853, Length=502, Percent_Identity=23.3067729083665, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI45551183, Length=426, Percent_Identity=25.8215962441315, Blast_Score=136, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24661428, Length=452, Percent_Identity=26.5486725663717, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI24654186, Length=303, Percent_Identity=28.0528052805281, Blast_Score=129, Evalue=6e-30,
Organism=Drosophila melanogaster, GI281363700, Length=328, Percent_Identity=30.1829268292683, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24582569, Length=405, Percent_Identity=23.7037037037037, Blast_Score=110, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 53189; Mature: 53189

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCC
>Mature Secondary Structure
MNHDNKSEWNSSLAFLMSMIGAAVGLGNIWRFSYVLYSNGGGSFFIPYFVAIGLLGIPFL
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHH
ILEYGLGFKFKTSFSNLLHKIRPRFEVIGWILGLLAFGVVTYYMVILAWDIVYLGASPFL
HHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AWGADPAGFFLNYVGGDSTISDWSHLILPTVAGLVIVWVMIWFISKKELNSGIGKVSKVL
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPLLFVIMAAIVIFSLTLPGHNLGIETLLTPDWSVLFDVNIWLAAFSQIIFSLSLGMAIA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
LTYASYLPEDSKLINNVLIVVSSNSGFEIFTAFGVFSILGFMSVTSGVPIESLIRQGTGL
HHHHHHCCCHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCE
VFIVFPTIFNTMGIAGKILGPLFFLAILFAGITSALGFLEPLLNSVCDKFGFTRKKSASI
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
LCGVGFVISMFFTCGISSYLVEIVDGFLNQFGILFLIALQCIIFGWILGIDDLIEVVNKD
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SVMHVGKLWVAIIKYILPCVIFIVWTFGIIDLIKTGGFLELAVDVVITLSILIASVMLTK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
FEDYK
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]