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The map label for this gene is yciO [C]

Identifier: 148642672

GI number: 148642672

Start: 582393

End: 582974

Strand: Reverse

Name: yciO [C]

Synonym: Msm_0612

Alternate gene names: 148642672

Gene position: 582974-582393 (Counterclockwise)

Preceding gene: 148642675

Following gene: 148642671

Centisome position: 31.46

GC content: 31.44

Gene sequence:

>582_bases
ATGAAAATATTAAAAACTAATCAAAATAAAGTAGATAAAAAGGTCATTGATGAGGCTGTTAAAGTTTTAGCTGATGGCGG
AGTTATTTTATATCCTACCGATACTGTTTACGGTTTGGGAGCTAATATTTTCAATAGAAAAGCTGTTAAAAGAGTTTATA
ATATTAAGAAAAGAAGCTATTTAAAACCGATTTCTCTTTTAGTTTCTTCTAAAGATGCAATTCCTTTGGTTTCAAGGGCT
TCTGTAAACCAGCTTAATTTTATGGACAAATATTTGCCTGGACCTTATACATTTATTTTAAAAAAGTCAAAAATTGTTCC
GAGACATCTGACAAGCGGGTCTGCTAATGTGGGTATCCGTGTTCCTGAAAGTGAGATTGCATGTAATTTAGCTAAACTTT
TTCCAATAACTACCACCAGCGCCAATATATCAAGTGAAAATACATTGGACACTCCTGAAGAAATATTGAAACAATTAGGA
TGTGAAGTTGATTTGGTTATTGATGTAGGTCCTTTAAAATCTAAAAATCCATCAACAATTATTGATTTGACTGCTGAAGA
ACCTATTTTTGTTAAAAGGTAA

Upstream 100 bases:

>100_bases
TTTAATATTTTTGTTAAAAAAGGACGTAGACTTTCAAGCATAATTTATATATAAAGATTTTACTCATATATAATTGTTCA
CAAAATATTCGGGTAATTTA

Downstream 100 bases:

>100_bases
GCTTAAAAATATATACTTTGTATAACTAAATAATATATTATGAAAGTCTTGGCTAATTTTGAGGATAATCATAAAATCCC
AACTAATTCAGGTATTGATA

Product: Sua5/YciO/YrdC/YwlC family translation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MKILKTNQNKVDKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSYLKPISLLVSSKDAIPLVSRA
SVNQLNFMDKYLPGPYTFILKKSKIVPRHLTSGSANVGIRVPESEIACNLAKLFPITTTSANISSENTLDTPEEILKQLG
CEVDLVIDVGPLKSKNPSTIIDLTAEEPIFVKR

Sequences:

>Translated_193_residues
MKILKTNQNKVDKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSYLKPISLLVSSKDAIPLVSRA
SVNQLNFMDKYLPGPYTFILKKSKIVPRHLTSGSANVGIRVPESEIACNLAKLFPITTTSANISSENTLDTPEEILKQLG
CEVDLVIDVGPLKSKNPSTIIDLTAEEPIFVKR
>Mature_193_residues
MKILKTNQNKVDKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSYLKPISLLVSSKDAIPLVSRA
SVNQLNFMDKYLPGPYTFILKKSKIVPRHLTSGSANVGIRVPESEIACNLAKLFPITTTSANISSENTLDTPEEILKQLG
CEVDLVIDVGPLKSKNPSTIIDLTAEEPIFVKR

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=179, Percent_Identity=31.8435754189944, Blast_Score=79, Evalue=3e-15,
Organism=Escherichia coli, GI87081864, Length=186, Percent_Identity=37.6344086021505, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI2367210, Length=185, Percent_Identity=29.1891891891892, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17537239, Length=195, Percent_Identity=32.3076923076923, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI78707274, Length=181, Percent_Identity=31.4917127071823, Blast_Score=88, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21255; Mature: 21255

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILKTNQNKVDKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSY
CCCEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHH
LKPISLLVSSKDAIPLVSRASVNQLNFMDKYLPGPYTFILKKSKIVPRHLTSGSANVGIR
HHHHHHHHCCCCCCCEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCEECCCCCCEEEE
VPESEIACNLAKLFPITTTSANISSENTLDTPEEILKQLGCEVDLVIDVGPLKSKNPSTI
CCHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCEE
IDLTAEEPIFVKR
EEECCCCCEEEEC
>Mature Secondary Structure
MKILKTNQNKVDKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSY
CCCEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHH
LKPISLLVSSKDAIPLVSRASVNQLNFMDKYLPGPYTFILKKSKIVPRHLTSGSANVGIR
HHHHHHHHCCCCCCCEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCEECCCCCCEEEE
VPESEIACNLAKLFPITTTSANISSENTLDTPEEILKQLGCEVDLVIDVGPLKSKNPSTI
CCHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCEE
IDLTAEEPIFVKR
EEECCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]