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The map label for this gene is hofB [C]

Identifier: 148642657

GI number: 148642657

Start: 569403

End: 570869

Strand: Reverse

Name: hofB [C]

Synonym: Msm_0597

Alternate gene names: 148642657

Gene position: 570869-569403 (Counterclockwise)

Preceding gene: 148642659

Following gene: 148642656

Centisome position: 30.81

GC content: 33.33

Gene sequence:

>1467_bases
ATGAACAATAATGTAATTAAAAAACAATTTGACAGTATTGGAAGCAATTTTGATGTTGTACCTCAATATAATGTTTTTAA
ACAAAAATACTCTTCTGAGGAAAAACTTCTTTTAAGTGAACTTCGTGAAAATTTAGTGGATTTAGCTATATCATCTGATG
AATCTCTTCAGGTAAATGAAGATAAGTTATTAAATGATATTAAGAACTTTTTATTTGCAAAGTTAGCAAACAACTCTCAA
AATAATACCATTTCAAATGAATATTTGGACAACTTAGCAAGAAAACTGTTTCAGGATCTTGTAGGTTATGGGGAAATTGA
CCCATTAATTCGTGATGATAATTTGGAAGAAATCATGGTAATTGGTATAGATAAACCGGTTTTTGTTTATCATAGGGAAT
ACGGTATGATGAAAACGAATATTCTGTTTAAAGATGCTGGTGAAGTGATGAATCTGATTGATTCAATAGCCAGACAGATA
AATCGCAGAATTGATCAGGAATCACCAATTTTGGATGGTAGGCTGCCGGACGGTTCAAGAGTTAATGCAACAATTCCTCC
AATTTCAGCAGACGGTCCGTCAATGACTATACGTAAATTTAAAAGAGATCCATTAACCATAATTGATTTGATAAACTCAA
AAACAATTTCAGTTGAACTTGCAGCATTTTTCTGGCTGTGTTTTGACGGTTTGGGAGTAAAATCAGCTAATGCAATAATA
TCTGGAGGAACCAGTTCCGGAAAAACCACAACATTAAATGCATTATCTTCATTTATAAATCCAAAAGAAAGGATAATTAC
AATTGAAGATACCTTAGAACTTCAAATACCTCATGAACATGTTATTAGAATGGAAACAAGACCGCCAAATGTTGAAAACA
GAGGTGAATTAACAATGAATGACTTGGTTAAAAACTCATTAAGACAAAGGCCGGACAGGATAATTGTCGGTGAAGTTAGG
GGAAGTGAAGCCATTACACTGTTTACAGCACTAAATACTGGACATTCTGGATTTGGGACACTTCATTCAAATGATGCAAG
AGAAACGATCACTCGATTAACTAATGCTCCGATGTCTGTTCCGAATATTATGATTTCAGCTATTGATTTTATAATAATGC
AAAACAGAATTTATAGGTCTGATGGAGTGTCATTCAGAAGAATAAGTGAAGTGGCGGAAGTATCCGGAATCGAAGAGGGA
GTAATTCAATTAAATAAGATATTTGAATGGGACCCCCAAAGTGACACTATTAAAAATGTGGGAATTACCAGTAAAACATT
AACTGAAATAGCTAATGTTAGTGGAAATTCTTTAAACAGTCTTTATGATGAAATCAAGAACCGTGAAATTGTTCTGCAGC
ATATGGTTGATTGGAATATCAGATCAATCAAGGATGTCAGCACTGTTTTGGAGATGTATTATTTGGATTCTCAAAAGGTG
TTAAACAGAATTTTATTGGCTGGATAG

Upstream 100 bases:

>100_bases
TGATTTTAATATGTAATTATTATTTGGAAAGTAATAAAAACTTTATTAATTAGTATTACTAATGTCTAAAATAGATTTAA
AATAGTTTTAGGTTGTAAAT

Downstream 100 bases:

>100_bases
TGGTAGTATGTTTGGTAATTTCTTTATAAAGGTAGCGGATGTGTTTTTAAATATTTTTGATTTTTTTAAGAATTTCAATT
TTAAAAATCTTAAACTTCCC

Product: type II/IV secretion system protein kinase, GspE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MNNNVIKKQFDSIGSNFDVVPQYNVFKQKYSSEEKLLLSELRENLVDLAISSDESLQVNEDKLLNDIKNFLFAKLANNSQ
NNTISNEYLDNLARKLFQDLVGYGEIDPLIRDDNLEEIMVIGIDKPVFVYHREYGMMKTNILFKDAGEVMNLIDSIARQI
NRRIDQESPILDGRLPDGSRVNATIPPISADGPSMTIRKFKRDPLTIIDLINSKTISVELAAFFWLCFDGLGVKSANAII
SGGTSSGKTTTLNALSSFINPKERIITIEDTLELQIPHEHVIRMETRPPNVENRGELTMNDLVKNSLRQRPDRIIVGEVR
GSEAITLFTALNTGHSGFGTLHSNDARETITRLTNAPMSVPNIMISAIDFIIMQNRIYRSDGVSFRRISEVAEVSGIEEG
VIQLNKIFEWDPQSDTIKNVGITSKTLTEIANVSGNSLNSLYDEIKNREIVLQHMVDWNIRSIKDVSTVLEMYYLDSQKV
LNRILLAG

Sequences:

>Translated_488_residues
MNNNVIKKQFDSIGSNFDVVPQYNVFKQKYSSEEKLLLSELRENLVDLAISSDESLQVNEDKLLNDIKNFLFAKLANNSQ
NNTISNEYLDNLARKLFQDLVGYGEIDPLIRDDNLEEIMVIGIDKPVFVYHREYGMMKTNILFKDAGEVMNLIDSIARQI
NRRIDQESPILDGRLPDGSRVNATIPPISADGPSMTIRKFKRDPLTIIDLINSKTISVELAAFFWLCFDGLGVKSANAII
SGGTSSGKTTTLNALSSFINPKERIITIEDTLELQIPHEHVIRMETRPPNVENRGELTMNDLVKNSLRQRPDRIIVGEVR
GSEAITLFTALNTGHSGFGTLHSNDARETITRLTNAPMSVPNIMISAIDFIIMQNRIYRSDGVSFRRISEVAEVSGIEEG
VIQLNKIFEWDPQSDTIKNVGITSKTLTEIANVSGNSLNSLYDEIKNREIVLQHMVDWNIRSIKDVSTVLEMYYLDSQKV
LNRILLAG
>Mature_488_residues
MNNNVIKKQFDSIGSNFDVVPQYNVFKQKYSSEEKLLLSELRENLVDLAISSDESLQVNEDKLLNDIKNFLFAKLANNSQ
NNTISNEYLDNLARKLFQDLVGYGEIDPLIRDDNLEEIMVIGIDKPVFVYHREYGMMKTNILFKDAGEVMNLIDSIARQI
NRRIDQESPILDGRLPDGSRVNATIPPISADGPSMTIRKFKRDPLTIIDLINSKTISVELAAFFWLCFDGLGVKSANAII
SGGTSSGKTTTLNALSSFINPKERIITIEDTLELQIPHEHVIRMETRPPNVENRGELTMNDLVKNSLRQRPDRIIVGEVR
GSEAITLFTALNTGHSGFGTLHSNDARETITRLTNAPMSVPNIMISAIDFIIMQNRIYRSDGVSFRRISEVAEVSGIEEG
VIQLNKIFEWDPQSDTIKNVGITSKTLTEIANVSGNSLNSLYDEIKNREIVLQHMVDWNIRSIKDVSTVLEMYYLDSQKV
LNRILLAG

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=151, Percent_Identity=33.7748344370861, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1789723, Length=156, Percent_Identity=32.6923076923077, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87082188, Length=129, Percent_Identity=34.1085271317829, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011451
- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR006141
- InterPro:   IPR001482 [H]

Pfam domain/function: PF07591 DUF1557; PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 54941; Mature: 54941

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNVIKKQFDSIGSNFDVVPQYNVFKQKYSSEEKLLLSELRENLVDLAISSDESLQVNE
CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEECCH
DKLLNDIKNFLFAKLANNSQNNTISNEYLDNLARKLFQDLVGYGEIDPLIRDDNLEEIMV
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
IGIDKPVFVYHREYGMMKTNILFKDAGEVMNLIDSIARQINRRIDQESPILDGRLPDGSR
EECCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
VNATIPPISADGPSMTIRKFKRDPLTIIDLINSKTISVELAAFFWLCFDGLGVKSANAII
EEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEHHHHHHHHHHHCCCCCCCCEEE
SGGTSSGKTTTLNALSSFINPKERIITIEDTLELQIPHEHVIRMETRPPNVENRGELTMN
ECCCCCCCCHHHHHHHHHCCCCCEEEEEECCEEEECCHHHEEEECCCCCCCCCCCCEEHH
DLVKNSLRQRPDRIIVGEVRGSEAITLFTALNTGHSGFGTLHSNDARETITRLTNAPMSV
HHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCH
PNIMISAIDFIIMQNRIYRSDGVSFRRISEVAEVSGIEEGVIQLNKIFEWDPQSDTIKNV
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHC
GITSKTLTEIANVSGNSLNSLYDEIKNREIVLQHMVDWNIRSIKDVSTVLEMYYLDSQKV
CCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHH
LNRILLAG
HHHHHCCC
>Mature Secondary Structure
MNNNVIKKQFDSIGSNFDVVPQYNVFKQKYSSEEKLLLSELRENLVDLAISSDESLQVNE
CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEECCH
DKLLNDIKNFLFAKLANNSQNNTISNEYLDNLARKLFQDLVGYGEIDPLIRDDNLEEIMV
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
IGIDKPVFVYHREYGMMKTNILFKDAGEVMNLIDSIARQINRRIDQESPILDGRLPDGSR
EECCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
VNATIPPISADGPSMTIRKFKRDPLTIIDLINSKTISVELAAFFWLCFDGLGVKSANAII
EEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEHHHHHHHHHHHCCCCCCCCEEE
SGGTSSGKTTTLNALSSFINPKERIITIEDTLELQIPHEHVIRMETRPPNVENRGELTMN
ECCCCCCCCHHHHHHHHHCCCCCEEEEEECCEEEECCHHHEEEECCCCCCCCCCCCEEHH
DLVKNSLRQRPDRIIVGEVRGSEAITLFTALNTGHSGFGTLHSNDARETITRLTNAPMSV
HHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCH
PNIMISAIDFIIMQNRIYRSDGVSFRRISEVAEVSGIEEGVIQLNKIFEWDPQSDTIKNV
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHC
GITSKTLTEIANVSGNSLNSLYDEIKNREIVLQHMVDWNIRSIKDVSTVLEMYYLDSQKV
CCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHH
LNRILLAG
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]