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The map label for this gene is rnp2

Identifier: 148642306

GI number: 148642306

Start: 231965

End: 232327

Strand: Reverse

Name: rnp2

Synonym: Msm_0246

Alternate gene names: 148642306

Gene position: 232327-231965 (Counterclockwise)

Preceding gene: 148642307

Following gene: 148642305

Centisome position: 12.54

GC content: 31.68

Gene sequence:

>363_bases
ATGAAGCTTAAGGTTCTTCCCCCTACACTTAGGAAAAATAACAGGTATTTGGCATTGGATATTAAAGTTAAAAGTGTTAT
TTCTAAAGATGATTTGGTTAATATTGTTTGGAATGGATGTATTCGCTTTTTTGGTGAAAATGGAACAGGCAATTTTAGTT
TATGGGTTATGAAGTTTTATGAGCTTGAAAAAACCGATGAGTATAATCATTATCAGGCAATTCTTCGCTGCCAAAGAGAG
TATGTTGATGAGGTAAGGGCTTCTCTTGCTTTAATTTATAAACATAATAGAAAAGATATTTCAGTTTCAACTATCGGTTT
ATCCGGAACTATCAAAGCCTGTCAGAAATTTATTGAAAAATAA

Upstream 100 bases:

>100_bases
CAAAGTGAAATTGACAAATCATTTACCTCAGCTGAAAACATTTTGGAATTTAATAAAAACAGGAAAAACATGGTTTTAAA
AGGAGTTAGGGAGGTTAATG

Downstream 100 bases:

>100_bases
AAGGAAAAATTACGCAAAACTTCAGCTCGTGGGCGTAAAAAATCAAAAACTTTTATATTCATCTATCAATTATTTTAATC
GTTTATCTTATTAGATTAAT

Product: ribonuclease P, subunit Rpp14

Products: NA

Alternate protein names: RNase P component 2

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKLKVLPPTLRKNNRYLALDIKVKSVISKDDLVNIVWNGCIRFFGENGTGNFSLWVMKFYELEKTDEYNHYQAILRCQRE
YVDEVRASLALIYKHNRKDISVSTIGLSGTIKACQKFIEK

Sequences:

>Translated_120_residues
MKLKVLPPTLRKNNRYLALDIKVKSVISKDDLVNIVWNGCIRFFGENGTGNFSLWVMKFYELEKTDEYNHYQAILRCQRE
YVDEVRASLALIYKHNRKDISVSTIGLSGTIKACQKFIEK
>Mature_120_residues
MKLKVLPPTLRKNNRYLALDIKVKSVISKDDLVNIVWNGCIRFFGENGTGNFSLWVMKFYELEKTDEYNHYQAILRCQRE
YVDEVRASLALIYKHNRKDISVSTIGLSGTIKACQKFIEK

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG1369

COG function: function code J; RNase P/RNase MRP subunit POP5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP2_METS3 (A5UJS3)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001272819.1
- ProteinModelPortal:   A5UJS3
- SMR:   A5UJS3
- STRING:   A5UJS3
- GeneID:   5216636
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0246
- eggNOG:   arNOG12799
- HOGENOM:   HBG551631
- OMA:   LKTLPPT
- ProtClustDB:   CLSK2791093
- HAMAP:   MF_00755
- InterPro:   IPR002759

Pfam domain/function: PF01900 RNase_P_Rpp14

EC number: =3.1.26.5

Molecular weight: Translated: 13991; Mature: 13991

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKVLPPTLRKNNRYLALDIKVKSVISKDDLVNIVWNGCIRFFGENGTGNFSLWVMKFY
CEEECCCCCCCCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
ELEKTDEYNHYQAILRCQREYVDEVRASLALIYKHNRKDISVSTIGLSGTIKACQKFIEK
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MKLKVLPPTLRKNNRYLALDIKVKSVISKDDLVNIVWNGCIRFFGENGTGNFSLWVMKFY
CEEECCCCCCCCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
ELEKTDEYNHYQAILRCQREYVDEVRASLALIYKHNRKDISVSTIGLSGTIKACQKFIEK
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA