| Definition | Methanobrevibacter smithii ATCC 35061 chromosome, complete genome. |
|---|---|
| Accession | NC_009515 |
| Length | 1,853,160 |
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The map label for this gene is 148642122
Identifier: 148642122
GI number: 148642122
Start: 61702
End: 62208
Strand: Reverse
Name: 148642122
Synonym: Msm_0062
Alternate gene names: NA
Gene position: 62208-61702 (Counterclockwise)
Preceding gene: 148642125
Following gene: 148642121
Centisome position: 3.36
GC content: 31.76
Gene sequence:
>507_bases ATGTCTGGAGATTTGATTTTATATTTTTCACGTGCAGGTGAAAATTATTATGAAGGTGATTTGAAAGTAGTTGAAAAAGG AAACACTGAAGTAGTTGCAGATTATATTAAAGAGATAACTAATGGGGATGTTTTTAAGGTAGAACCGGAAATTCCCTATC CTGAAGATTATATGGAATGTACTGAAGTAACTAAAAATGAGAAAAATGGCAGAGTATTAAAGGAAACCCTTGAAGATGTT GGGGATTACGAAGGGGTTTATATAGGATTTCCCATTTGGTGGGGAAAAATGCCGATTGTTTTTGAATCTCAGTTAGATAA ATTGGATTTTAAAGGTAAAGTTGTAAAACCTTTTGTTACTCATGAGGGTTCCGGTTTTGGAAAATCTAAAAAACAATTAA AAAAGCTATGTAAAGGTGCAGATATTAGAAATGGTCTTGAAATTAAGGGCAGTGATGTTTTAGGTTCAAAAGACAAAGTC AAATGTTGGATTAATGATAATTTATAA
Upstream 100 bases:
>100_bases AAATATAATAAATAAATATTGCCCATTATTTTTTTTAAAATGGAATATACTTAATAACGGTTTTTTATATAAATTATATT TAGATAATAAGGAGATATTT
Downstream 100 bases:
>100_bases TTTTTTTTAAAGTTTTTTTTTATTTATTGCTGTTTTATGTAATATTTTTTTATAATTTAAATAATTTTAAATATTTTAAA ATACTACTTTTAATTATAAA
Product: flavodoxin
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal; Flavodoxin Protein; Exported; Flavodoxin Family Protein; Lipoprotein
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MSGDLILYFSRAGENYYEGDLKVVEKGNTEVVADYIKEITNGDVFKVEPEIPYPEDYMECTEVTKNEKNGRVLKETLEDV GDYEGVYIGFPIWWGKMPIVFESQLDKLDFKGKVVKPFVTHEGSGFGKSKKQLKKLCKGADIRNGLEIKGSDVLGSKDKV KCWINDNL
Sequences:
>Translated_168_residues MSGDLILYFSRAGENYYEGDLKVVEKGNTEVVADYIKEITNGDVFKVEPEIPYPEDYMECTEVTKNEKNGRVLKETLEDV GDYEGVYIGFPIWWGKMPIVFESQLDKLDFKGKVVKPFVTHEGSGFGKSKKQLKKLCKGADIRNGLEIKGSDVLGSKDKV KCWINDNL >Mature_167_residues SGDLILYFSRAGENYYEGDLKVVEKGNTEVVADYIKEITNGDVFKVEPEIPYPEDYMECTEVTKNEKNGRVLKETLEDVG DYEGVYIGFPIWWGKMPIVFESQLDKLDFKGKVVKPFVTHEGSGFGKSKKQLKKLCKGADIRNGLEIKGSDVLGSKDKVK CWINDNL
Specific function: Unknown
COG id: COG0716
COG function: function code C; Flavodoxins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19016; Mature: 18885
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGDLILYFSRAGENYYEGDLKVVEKGNTEVVADYIKEITNGDVFKVEPEIPYPEDYMEC CCCCEEEEEECCCCCEECCCEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH TEVTKNEKNGRVLKETLEDVGDYEGVYIGFPIWWGKMPIVFESQLDKLDFKGKVVKPFVT HHHHCCCCCCHHHHHHHHHHCCCCCEEEECEEECCCCCEEECCCCCCCCCCCEEECEEEE HEGSGFGKSKKQLKKLCKGADIRNGLEIKGSDVLGSKDKVKCWINDNL CCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCCC >Mature Secondary Structure SGDLILYFSRAGENYYEGDLKVVEKGNTEVVADYIKEITNGDVFKVEPEIPYPEDYMEC CCCEEEEEECCCCCEECCCEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH TEVTKNEKNGRVLKETLEDVGDYEGVYIGFPIWWGKMPIVFESQLDKLDFKGKVVKPFVT HHHHCCCCCCHHHHHHHHHHCCCCCEEEECEEECCCCCEEECCCCCCCCCCCEEECEEEE HEGSGFGKSKKQLKKLCKGADIRNGLEIKGSDVLGSKDKVKCWINDNL CCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA