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The map label for this gene is ycdX [C]

Identifier: 148381320

GI number: 148381320

Start: 3616624

End: 3617355

Strand: Reverse

Name: ycdX [C]

Synonym: CBO3379

Alternate gene names: 148381320

Gene position: 3617355-3616624 (Counterclockwise)

Preceding gene: 148381321

Following gene: 148381319

Centisome position: 93.06

GC content: 30.46

Gene sequence:

>732_bases
GTGAGATATTTAGTAGATACACATACACATACAATAGTAAGTGGGCATGCATACACTACATTTTTAGAAAATGTACAAGA
AGCTTCTAATATAGGCCTAAAAGTTTTAGGTACTACGGATCACGGGCCAAGTATGCCAGGAGGACCTAATCTATTTTATT
TTAATAATTTTAAGGTTATGCCTAGAAAATTAAAAGGAGTAACTTTATTACATGGTTGCGAAGCTAATATTATAGATTTT
AAGGGGATGCTAGATATTCCTGATTTTACTCAAAAAAAATTAGATGTAATTATAGCTAGTTTACATGATGTTTGCATAAG
ACCTGGTAGTGTGGAAGAAAATACAGAGGCATTAATTAATGTTATGGAGAATCCCTATGTAGATATACTGGGGCATATTG
GCAACCCTTCTTTCCCAATAAATGAAGAAGTAGTAGTAAAGAAGGCTAAAGAAAAAAATGTATTAATAGAAATAAATAAT
GGTTCTTTTGTTTCAAGAAAGGGCAGTGAAGAAACCTGCAAAAAGGTAGCAAATTTATGCAAAAAGCATAAAGTAAATAT
TATAGTAGGCAGTGATTCGCATGTTTGTTTTCAAATAGGTAGATTCCCTAAAGCAGACAATATGCTTAAAGAGATAGGTA
TGCCAGAGGAACTTATTATAAATAATGAGGAGAATAAAATATTAAAATATTTAAAGAATAAAGGAAAGTTAAAGGATTTA
AATCTTGATTAA

Upstream 100 bases:

>100_bases
ACCATCTATGGATAAGAAGTCAGCTGAGTGTGTGCTTGAATTTTTTAAATAAAAATTGTTTTTTACTAGAAAGTATAAAA
TTATTGAGAGAAGGGTTAAA

Downstream 100 bases:

>100_bases
GGGTTAAGCATACATTATACTAATAAGGGTATTTAATTTAGTAATAAAAAAATCAAGGAGAATGTGTTATGAACCAATAT
AAAAATTTTATCATGCAGTT

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRYLVDTHTHTIVSGHAYTTFLENVQEASNIGLKVLGTTDHGPSMPGGPNLFYFNNFKVMPRKLKGVTLLHGCEANIIDF
KGMLDIPDFTQKKLDVIIASLHDVCIRPGSVEENTEALINVMENPYVDILGHIGNPSFPINEEVVVKKAKEKNVLIEINN
GSFVSRKGSEETCKKVANLCKKHKVNIIVGSDSHVCFQIGRFPKADNMLKEIGMPEELIINNEENKILKYLKNKGKLKDL
NLD

Sequences:

>Translated_243_residues
MRYLVDTHTHTIVSGHAYTTFLENVQEASNIGLKVLGTTDHGPSMPGGPNLFYFNNFKVMPRKLKGVTLLHGCEANIIDF
KGMLDIPDFTQKKLDVIIASLHDVCIRPGSVEENTEALINVMENPYVDILGHIGNPSFPINEEVVVKKAKEKNVLIEINN
GSFVSRKGSEETCKKVANLCKKHKVNIIVGSDSHVCFQIGRFPKADNMLKEIGMPEELIINNEENKILKYLKNKGKLKDL
NLD
>Mature_243_residues
MRYLVDTHTHTIVSGHAYTTFLENVQEASNIGLKVLGTTDHGPSMPGGPNLFYFNNFKVMPRKLKGVTLLHGCEANIIDF
KGMLDIPDFTQKKLDVIIASLHDVCIRPGSVEENTEALINVMENPYVDILGHIGNPSFPINEEVVVKKAKEKNVLIEINN
GSFVSRKGSEETCKKVANLCKKHKVNIIVGSDSHVCFQIGRFPKADNMLKEIGMPEELIINNEENKILKYLKNKGKLKDL
NLD

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=234, Percent_Identity=37.1794871794872, Blast_Score=167, Evalue=5e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 27142; Mature: 27142

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLVDTHTHTIVSGHAYTTFLENVQEASNIGLKVLGTTDHGPSMPGGPNLFYFNNFKVM
CCEEEECCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCEEEC
PRKLKGVTLLHGCEANIIDFKGMLDIPDFTQKKLDVIIASLHDVCIRPGSVEENTEALIN
CHHCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
VMENPYVDILGHIGNPSFPINEEVVVKKAKEKNVLIEINNGSFVSRKGSEETCKKVANLC
HHCCCCEEEHCCCCCCCCCCCHHHHEEECCCCCEEEEECCCCEEECCCCHHHHHHHHHHH
KKHKVNIIVGSDSHVCFQIGRFPKADNMLKEIGMPEELIINNEENKILKYLKNKGKLKDL
HHCEEEEEEECCCCEEEEECCCCCHHHHHHHHCCCHHEEEECCHHHHHHHHHCCCCEECC
NLD
CCC
>Mature Secondary Structure
MRYLVDTHTHTIVSGHAYTTFLENVQEASNIGLKVLGTTDHGPSMPGGPNLFYFNNFKVM
CCEEEECCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCEEEC
PRKLKGVTLLHGCEANIIDFKGMLDIPDFTQKKLDVIIASLHDVCIRPGSVEENTEALIN
CHHCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
VMENPYVDILGHIGNPSFPINEEVVVKKAKEKNVLIEINNGSFVSRKGSEETCKKVANLC
HHCCCCEEEHCCCCCCCCCCCHHHHEEECCCCCEEEEECCCCEEECCCCHHHHHHHHHHH
KKHKVNIIVGSDSHVCFQIGRFPKADNMLKEIGMPEELIINNEENKILKYLKNKGKLKDL
HHCEEEEEEECCCCEEEEECCCCCHHHHHHHHCCCHHEEEECCHHHHHHHHHCCCCEECC
NLD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA