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The map label for this gene is yqgF [C]

Identifier: 148360766

GI number: 148360766

Start: 714182

End: 714610

Strand: Direct

Name: yqgF [C]

Synonym: LPC_2716

Alternate gene names: 148360766

Gene position: 714182-714610 (Clockwise)

Preceding gene: 148360767

Following gene: 148360765

Centisome position: 19.97

GC content: 42.89

Gene sequence:

>429_bases
ATGCTGGCCATGCCTAGAGGTGTTTATTTAGGTTTTGATTTCGGGTATAAACGCATAGGAGTCGCTGTAGGACAGCGCCT
AACTTGTAGTGCCTCTCCCTTATCTACTATAGAAGCCAAAGCCGGAATCCCTGATTGGAATACCATTCAAAAAGTGATAA
CCCAATGGAATCCACAAGCTTTAATTGTAGGTCTTCCTACCTGTATTGATGACCGTGAATTGTATACAACATCAGCTGCT
CGTTGTTTTGCAAAGCAATTGCACAAGCGGTTTTCTTTACCTGTGCATTTAGTCGATGAACGACTTTCAACAGTAGAGGC
AAGAGGGTATTTGTTTGAGCAGGGGGGATATCGCCAGATTAAAAAAGCCGAGGTAGATAGTATAGCAGCTTGTGTTATAC
TGGAGCAGTGGTTGCAACAATCGGAATAA

Upstream 100 bases:

>100_bases
TGTCCCTATAAATCTGAAATTCTTTATGAAGTGCCCTTTGAAGAGCGTTGGGAATACGCGGGATTAACGCTGGGCATCAA
AATGAATCAACTATCTTCTG

Downstream 100 bases:

>100_bases
CTCAAAGAGTATTTTTCTTTTGGCGTAAAATGAAATTTGGCGGGGGAACATGAAGCATTTTCTTGAAATTAGTCAATTGT
CATCTGAACAAATTGAATCC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MLAMPRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCIDDRELYTTSAA
RCFAKQLHKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIAACVILEQWLQQSE

Sequences:

>Translated_142_residues
MLAMPRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCIDDRELYTTSAA
RCFAKQLHKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIAACVILEQWLQQSE
>Mature_142_residues
MLAMPRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCIDDRELYTTSAA
RCFAKQLHKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIAACVILEQWLQQSE

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=54.0740740740741, Blast_Score=156, Evalue=6e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15904; Mature: 15904

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAMPRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQA
CCCCCCCEEEEECCCHHHHHHHHCCEEEECCCCCCHHHHCCCCCCHHHHHHHHHCCCCCE
LIVGLPTCIDDRELYTTSAARCFAKQLHKRFSLPVHLVDERLSTVEARGYLFEQGGYRQI
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEECCCCCHHH
KKAEVDSIAACVILEQWLQQSE
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLAMPRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQA
CCCCCCCEEEEECCCHHHHHHHHCCEEEECCCCCCHHHHCCCCCCHHHHHHHHHCCCCCE
LIVGLPTCIDDRELYTTSAARCFAKQLHKRFSLPVHLVDERLSTVEARGYLFEQGGYRQI
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEECCCCCHHH
KKAEVDSIAACVILEQWLQQSE
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA