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The map label for this gene is intF [C]

Identifier: 148360191

GI number: 148360191

Start: 2844650

End: 2845018

Strand: Reverse

Name: intF [C]

Synonym: LPC_2123

Alternate gene names: 148360191

Gene position: 2845018-2844650 (Counterclockwise)

Preceding gene: 148360190

Following gene: 148360192

Centisome position: 79.55

GC content: 39.02

Gene sequence:

>369_bases
ATGTCTGATTTTGTCTATGTGTTAATGGAACGCAGAAGCCGAAATAAAACCAGTGAATTTGTATTCCAGGCTGAAAGTAA
AACAGGTTATATCTATGAACCTAAAAAAGCAGTGAATAGGGTAGTGGAGTTGTCTGGCGTACCATTTACCTTGCCTGATC
TTCGTAGAACTTTTGCGACTATCGCGGATAGCCTTGATTTGCCTGCTTATGCTTTAAAACGCTTGCTGAATCATAAAATG
AACAATGACGTTACAGCAGGATATATTATGAAAGATGCTGAGCGGTTGCGTAAGCCGATGCAGCAGGTTGCTAACTTCTT
GCTAAAGCATATTGAAGGGGATAATTCATTAAATATCATGGTGATTTGA

Upstream 100 bases:

>100_bases
ACATCAATTGTTTAAAGATTTTATATTGCAATCTGATTTAAACAAAATGATTTCAAATTAGGCGCGAATAAACCCAAAAA
TCAAGAAATACATCTTGCCT

Downstream 100 bases:

>100_bases
CGAATATTTAGTATAATTAATTTACTACATCCCCTAGGACTTCTCTCCTAGGGCGCAGAGCCTCTTCGGAGGCTCTTGTT
TTTTCTGGCTTTTAAAAATG

Product: putative prophage CP4-6 integrase

Products: NA

Alternate protein names: Integrase Family Protein; Phage Related Integrase; Prophage CP4-6 Integrase; Integrase; Site-Specific Recombinase Phage Integrase Family; Site-Specific Recombinase Phage Integrase Family Protein; Phage Integrase Family Protein; Integrase Bacteriophage

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSDFVYVLMERRSRNKTSEFVFQAESKTGYIYEPKKAVNRVVELSGVPFTLPDLRRTFATIADSLDLPAYALKRLLNHKM
NNDVTAGYIMKDAERLRKPMQQVANFLLKHIEGDNSLNIMVI

Sequences:

>Translated_122_residues
MSDFVYVLMERRSRNKTSEFVFQAESKTGYIYEPKKAVNRVVELSGVPFTLPDLRRTFATIADSLDLPAYALKRLLNHKM
NNDVTAGYIMKDAERLRKPMQQVANFLLKHIEGDNSLNIMVI
>Mature_121_residues
SDFVYVLMERRSRNKTSEFVFQAESKTGYIYEPKKAVNRVVELSGVPFTLPDLRRTFATIADSLDLPAYALKRLLNHKMN
NDVTAGYIMKDAERLRKPMQQVANFLLKHIEGDNSLNIMVI

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14056; Mature: 13924

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFVYVLMERRSRNKTSEFVFQAESKTGYIYEPKKAVNRVVELSGVPFTLPDLRRTFAT
CCHHHHHHHHHHCCCCHHHHEEECCCCCCCEECCHHHHHHHHHHCCCCCCCHHHHHHHHH
IADSLDLPAYALKRLLNHKMNNDVTAGYIMKDAERLRKPMQQVANFLLKHIEGDNSLNIM
HHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
VI
EC
>Mature Secondary Structure 
SDFVYVLMERRSRNKTSEFVFQAESKTGYIYEPKKAVNRVVELSGVPFTLPDLRRTFAT
CHHHHHHHHHHCCCCHHHHEEECCCCCCCEECCHHHHHHHHHHCCCCCCCHHHHHHHHH
IADSLDLPAYALKRLLNHKMNNDVTAGYIMKDAERLRKPMQQVANFLLKHIEGDNSLNIM
HHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
VI
EC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA