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The map label for this gene is 148360024

Identifier: 148360024

GI number: 148360024

Start: 3021492

End: 3021806

Strand: Reverse

Name: 148360024

Synonym: LPC_1955

Alternate gene names: NA

Gene position: 3021806-3021492 (Counterclockwise)

Preceding gene: 148360023

Following gene: 148360025

Centisome position: 84.49

GC content: 40.95

Gene sequence:

>315_bases
ATGTATATGTTGTATTTTCATGTTCCAGAAACTCATCTTGACGAAGTCAAAAATGCGGTTTTTGCGGCAGGGGCAGGGCA
TGTTGATAATTATACTCATTGTGCCTGGCAAACTTTAGGTGAAGGTCAGTTTATGCCTTTAACAGGTAGTCAGGCATTTA
TTGGAGAAATTAACCAATTGGAGAAAGTGCCTGAATACAAGGTAGAAACGATTTGCGCCGGAGAGAGAATCAAAGAGGTG
GTTGCAGCTTTAAAAAAAGCTCATCCCTATGAAAGCCCTTCTTATCAAGTGGTGCGTATTGAGACGGAGTTCTAA

Upstream 100 bases:

>100_bases
AAATTTTAGCCGGGATGCTTCCTTTGTTTCTCCTGAATTACGATAATTACTGGCATTTTTATCTTGTGGGGTAATAAATA
TCAAGGGAGGCATTGCTATC

Downstream 100 bases:

>100_bases
ATATCAGACAGGATAATTCAGGCAGGTTGAATCACCAGATGGTTGGTCAATTAGTAAGAATTTGTTTCTTCAGGATACTT
GTTCAATTGAGTATTCATAG

Product: structural toxin protein (hemagglutinin/hemolysin) RtxA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MYMLYFHVPETHLDEVKNAVFAAGAGHVDNYTHCAWQTLGEGQFMPLTGSQAFIGEINQLEKVPEYKVETICAGERIKEV
VAALKKAHPYESPSYQVVRIETEF

Sequences:

>Translated_104_residues
MYMLYFHVPETHLDEVKNAVFAAGAGHVDNYTHCAWQTLGEGQFMPLTGSQAFIGEINQLEKVPEYKVETICAGERIKEV
VAALKKAHPYESPSYQVVRIETEF
>Mature_104_residues
MYMLYFHVPETHLDEVKNAVFAAGAGHVDNYTHCAWQTLGEGQFMPLTGSQAFIGEINQLEKVPEYKVETICAGERIKEV
VAALKKAHPYESPSYQVVRIETEF

Specific function: Unknown

COG id: COG3323

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678
- InterPro:   IPR017221 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 11748; Mature: 11748

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMLYFHVPETHLDEVKNAVFAAGAGHVDNYTHCAWQTLGEGQFMPLTGSQAFIGEINQL
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHH
EKVPEYKVETICAGERIKEVVAALKKAHPYESPSYQVVRIETEF
HCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MYMLYFHVPETHLDEVKNAVFAAGAGHVDNYTHCAWQTLGEGQFMPLTGSQAFIGEINQL
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHH
EKVPEYKVETICAGERIKEVVAALKKAHPYESPSYQVVRIETEF
HCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]