Click here to switch to the map view.

The map label for this gene is 148360012

Identifier: 148360012

GI number: 148360012

Start: 3031063

End: 3032613

Strand: Direct

Name: 148360012

Synonym: LPC_1943

Alternate gene names: NA

Gene position: 3031063-3032613 (Clockwise)

Preceding gene: 148360014

Following gene: 148360009

Centisome position: 84.75

GC content: 40.75

Gene sequence:

>1551_bases
ATGTCTCCACGTATTTGTTGCTATAACCAATACCCTGGCTTATATCAAGATTTTGATGCGATGCGGGAAGATTTGCAGCG
AATTCAGAAGATGGGTTTTACGCAAGTTTGGGTCAACCCTTTTTATACACCTTGTCAATATAATCCTATCCCTAACATGG
CTAATCGTATTCATAGTCCTTATGCCATGCAAAATGAATCGATTTATCCACGCTATGCCAAGAATGAAAAAAGCGTTCAG
CAATACACTGCAAAAGCAAATGAGCTTGGCTTAATGCCTGTATTTGATTTGGTCGCAAGACACTTGGCGGTAGATCATCG
TTTTGTGAATGGCGATAAATTTTTTCTTGAAAAATACAATATCGATACGAAAAAATGGTTTAAACGTCACCCCAATGGAA
ATTTGGTGATGCATAACATGGACGAAAATTACAATCCGTTGACCAATAATCCCTGGAGTGATGTGGCAACGTTTAACTAT
GATGACCCTGTCATTTGCGAACAAATCATCGAATATTATTGGAAGCCGTTTATCGAGCGTAATATTGAGCATCTTGGTTT
TCAGGGAATACGTATTGATGCCCCAGCCATGGTAAATAACAAGGTATTGTCTCGACTAACAGAAATCGCAAAGGAGGCTT
GCCAACGCAAATTTCAACGTGACCCGCTTATTATTGCAGAAACGATAGGCAGGGGTTATATGGAAGAAAATCTTGCTTTG
AAAGGTATTGTAACCCACACGATGAATAGTGTGTTCTGGATGCCGGGCCCCGAAGGTGGCTATGGTTATTCATATAACTT
ATGGCAGCAGGATGACAATTGGTTTACTCAAAATAAAGGATTATTACAGCAGGTTGGTCCTACAATTGGTTTTCCTGGCT
CTCATGATGAGCCACGCTATATTCAGCAACTGGTGGAAAAAGGTATCCATGATGACAAATTACTTGCAAAACGCATGCGC
GAAAAACTGGCTGTCAGCGCATTTTGTTCTGATGGCGGTTGGATTTTACAATACGGTGATGAATATGGTGCTACCAAGCC
AGTAAACGTTTTTGATCCAACCCCTGTTGAATATCATCAACAAAATCATCTGAGACGATTTGATCTGTCAGACTATATCT
CTGAAATTAATACAACACTTGCCCAGCTACCCAATCCTCACTTCCCCGAATGGGCGCAGCGGGTCTTTCTTCCGAATCAT
CCAGATTTGGTAACCTTTATTGTTCACCAGGGTTGGGGTTATACTGGGACCTCATTCGTTATTGCGACAAACACCGATCC
CTCTCAGCAAATCCAATTAACAGAAAAAGAACTTGGAGAAATAATGCTGGCAAATGGCCGAAATAATACGACTGAAAAAC
AGATGAAACCCCAAGTGCTTTATTTATGTGGCGCAGTTCGCGCATCACCTGAATTGAAAAAAGAGATCCAAATTGTTGCA
TCAAGGCCAACTGTAAGTGAAAAATCTCCTCATTTTTTCCAGAGCCATCCTGAAGAAAAAAAAACGGGCGAAAAGTTACA
TTCGGACAATACACCACCCCAATTTAAATAA

Upstream 100 bases:

>100_bases
GCATGCATAGGAATTAAATGATTGGCAACAATACAATAAGGTCGAATTTAATACTTCTACTATACTTCATATACATAGAA
ACAGAAATTGAGAAGTCAGC

Downstream 100 bases:

>100_bases
CAGGTACCAGGCTTAGCTCTAAAACCACGTTTACTGGTGAGTTGATTGTTATCATATTGCTTACTCACCAATCAGCACAT
CACTTTGATAAGGAAGCAGC

Product: alpha-amylase

Products: NA

Alternate protein names: Alpha-Amylase; Alpha Amylase Catalytic Subunit; Alpha Amylase Catalytic Domain Family; Alpha Amylase Catalytic Domain Protein; Alpha Amylase Family Protein; Alpha-Amylase-Related Protein; Alpha Amylase Catalytic Domain Subfamily

Number of amino acids: Translated: 516; Mature: 515

Protein sequence:

>516_residues
MSPRICCYNQYPGLYQDFDAMREDLQRIQKMGFTQVWVNPFYTPCQYNPIPNMANRIHSPYAMQNESIYPRYAKNEKSVQ
QYTAKANELGLMPVFDLVARHLAVDHRFVNGDKFFLEKYNIDTKKWFKRHPNGNLVMHNMDENYNPLTNNPWSDVATFNY
DDPVICEQIIEYYWKPFIERNIEHLGFQGIRIDAPAMVNNKVLSRLTEIAKEACQRKFQRDPLIIAETIGRGYMEENLAL
KGIVTHTMNSVFWMPGPEGGYGYSYNLWQQDDNWFTQNKGLLQQVGPTIGFPGSHDEPRYIQQLVEKGIHDDKLLAKRMR
EKLAVSAFCSDGGWILQYGDEYGATKPVNVFDPTPVEYHQQNHLRRFDLSDYISEINTTLAQLPNPHFPEWAQRVFLPNH
PDLVTFIVHQGWGYTGTSFVIATNTDPSQQIQLTEKELGEIMLANGRNNTTEKQMKPQVLYLCGAVRASPELKKEIQIVA
SRPTVSEKSPHFFQSHPEEKKTGEKLHSDNTPPQFK

Sequences:

>Translated_516_residues
MSPRICCYNQYPGLYQDFDAMREDLQRIQKMGFTQVWVNPFYTPCQYNPIPNMANRIHSPYAMQNESIYPRYAKNEKSVQ
QYTAKANELGLMPVFDLVARHLAVDHRFVNGDKFFLEKYNIDTKKWFKRHPNGNLVMHNMDENYNPLTNNPWSDVATFNY
DDPVICEQIIEYYWKPFIERNIEHLGFQGIRIDAPAMVNNKVLSRLTEIAKEACQRKFQRDPLIIAETIGRGYMEENLAL
KGIVTHTMNSVFWMPGPEGGYGYSYNLWQQDDNWFTQNKGLLQQVGPTIGFPGSHDEPRYIQQLVEKGIHDDKLLAKRMR
EKLAVSAFCSDGGWILQYGDEYGATKPVNVFDPTPVEYHQQNHLRRFDLSDYISEINTTLAQLPNPHFPEWAQRVFLPNH
PDLVTFIVHQGWGYTGTSFVIATNTDPSQQIQLTEKELGEIMLANGRNNTTEKQMKPQVLYLCGAVRASPELKKEIQIVA
SRPTVSEKSPHFFQSHPEEKKTGEKLHSDNTPPQFK
>Mature_515_residues
SPRICCYNQYPGLYQDFDAMREDLQRIQKMGFTQVWVNPFYTPCQYNPIPNMANRIHSPYAMQNESIYPRYAKNEKSVQQ
YTAKANELGLMPVFDLVARHLAVDHRFVNGDKFFLEKYNIDTKKWFKRHPNGNLVMHNMDENYNPLTNNPWSDVATFNYD
DPVICEQIIEYYWKPFIERNIEHLGFQGIRIDAPAMVNNKVLSRLTEIAKEACQRKFQRDPLIIAETIGRGYMEENLALK
GIVTHTMNSVFWMPGPEGGYGYSYNLWQQDDNWFTQNKGLLQQVGPTIGFPGSHDEPRYIQQLVEKGIHDDKLLAKRMRE
KLAVSAFCSDGGWILQYGDEYGATKPVNVFDPTPVEYHQQNHLRRFDLSDYISEINTTLAQLPNPHFPEWAQRVFLPNHP
DLVTFIVHQGWGYTGTSFVIATNTDPSQQIQLTEKELGEIMLANGRNNTTEKQMKPQVLYLCGAVRASPELKKEIQIVAS
RPTVSEKSPHFFQSHPEEKKTGEKLHSDNTPPQFK

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59771; Mature: 59640

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRICCYNQYPGLYQDFDAMREDLQRIQKMGFTQVWVNPFYTPCQYNPIPNMANRIHSP
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHCCC
YAMQNESIYPRYAKNEKSVQQYTAKANELGLMPVFDLVARHLAVDHRFVNGDKFFLEKYN
CCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEECCCEEEEEECC
IDTKKWFKRHPNGNLVMHNMDENYNPLTNNPWSDVATFNYDDPVICEQIIEYYWKPFIER
CCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHC
NIEHLGFQGIRIDAPAMVNNKVLSRLTEIAKEACQRKFQRDPLIIAETIGRGYMEENLAL
CHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHCCHH
KGIVTHTMNSVFWMPGPEGGYGYSYNLWQQDDNWFTQNKGLLQQVGPTIGFPGSHDEPRY
HHHHHHHCCCEEECCCCCCCCCCEEECEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHH
IQQLVEKGIHDDKLLAKRMREKLAVSAFCSDGGWILQYGDEYGATKPVNVFDPTPVEYHQ
HHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHH
QNHLRRFDLSDYISEINTTLAQLPNPHFPEWAQRVFLPNHPDLVTFIVHQGWGYTGTSFV
HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEE
IATNTDPSQQIQLTEKELGEIMLANGRNNTTEKQMKPQVLYLCGAVRASPELKKEIQIVA
EEECCCCCHHEEECHHHHCCEEEECCCCCCHHHHHCCHHHHHHHHHHCCHHHHHHHEEEE
SRPTVSEKSPHFFQSHPEEKKTGEKLHSDNTPPQFK
CCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SPRICCYNQYPGLYQDFDAMREDLQRIQKMGFTQVWVNPFYTPCQYNPIPNMANRIHSP
CCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHCCC
YAMQNESIYPRYAKNEKSVQQYTAKANELGLMPVFDLVARHLAVDHRFVNGDKFFLEKYN
CCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEECCCEEEEEECC
IDTKKWFKRHPNGNLVMHNMDENYNPLTNNPWSDVATFNYDDPVICEQIIEYYWKPFIER
CCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHC
NIEHLGFQGIRIDAPAMVNNKVLSRLTEIAKEACQRKFQRDPLIIAETIGRGYMEENLAL
CHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHCCHH
KGIVTHTMNSVFWMPGPEGGYGYSYNLWQQDDNWFTQNKGLLQQVGPTIGFPGSHDEPRY
HHHHHHHCCCEEECCCCCCCCCCEEECEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHH
IQQLVEKGIHDDKLLAKRMREKLAVSAFCSDGGWILQYGDEYGATKPVNVFDPTPVEYHQ
HHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHH
QNHLRRFDLSDYISEINTTLAQLPNPHFPEWAQRVFLPNHPDLVTFIVHQGWGYTGTSFV
HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEE
IATNTDPSQQIQLTEKELGEIMLANGRNNTTEKQMKPQVLYLCGAVRASPELKKEIQIVA
EEECCCCCHHEEECHHHHCCEEEECCCCCCHHHHHCCHHHHHHHHHHCCHHHHHHHEEEE
SRPTVSEKSPHFFQSHPEEKKTGEKLHSDNTPPQFK
CCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA