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The map label for this gene is phaC [H]

Identifier: 148359628

GI number: 148359628

Start: 2413252

End: 2415045

Strand: Reverse

Name: phaC [H]

Synonym: LPC_1543

Alternate gene names: 148359628

Gene position: 2415045-2413252 (Counterclockwise)

Preceding gene: 148359630

Following gene: 148359624

Centisome position: 67.53

GC content: 45.65

Gene sequence:

>1794_bases
ATGAAGGGGCTAGAAAAACAATGCTGCTCTAAGGAAAGGATACTCACTCAGAGCCAAGAATTGCAAGAAGGGGTGGATTT
CTCTTGCTGTGTACCCGTTGAGAGTACTTCCTCCAATAGCTTCTTTTCGTTTTTTACTCGATTAACTCAAGCTAACTTGG
CTAAATGGACAGCAGGAATAAGTCCTGCTGCCATCGGCTCTTCCTATTCCACCTGGCTTTGGCAATTAGCTCAATCCCCC
GGGGTCTTATGGGAACTCGCTTTTTATCCGGTTTTGCACGCCAAGGATTGCATTAATAATATCGTTTGCGTTGAGCGTGC
TGCGGATGGTAAAGACGTGCGTTTTAAAAAGAACAGTTGGCAGCCAATGCCTTGGCGTTTATTCGCCGAAGGATTTTTGC
AGATGGAAGATTGGTGGCGACGTGCCACAACGGACGTACCAGGATTACCCAAACCGGTAGAGCGCACTGTTTCGTTCTGG
GCACGCCAATGCCTTGATGCCCTGTCACCTTCCAATTTTGCTTGGTCTAATCCTGATTTATTCCATGAAACTATGCGCAC
TGGGGGACTTAATCTTATCCAAGGCACCCAAATCGCGTTGGAGGATTGGTTGGAAAAGCTGGCGGGTGCACCGCCTACGG
GCTCTGAACATTTTATCCCAGGTCAACACGTGGCCATTACACCAGGACGAGTGGTGTTTCAAAATCATTTGATTGAGCTC
ATTCAATACGAATCTCATACTAAGACGGTGTATAAAGAGCCTATCTTAACCTTTCCCGCCTGGATTATGAAATATTATAT
TTTGGATTTGTCACCGCATAACTCCATGGTGAAGTGGCTCGTAAGTCAGGGACACACCGTATTCATCATTTCTTGGCGCA
ATCCTGACAAAGAGGACCGTGATTTAGGGATGGATGATTATTATAGGCAAGGAGCTATGGCCGCCATTGATACGGTATCG
ACTCTTTTGCCAGGAACCAAAATCAATCTGATGGGTTATTGTTTAGGTGGCACCTTGGCTATGATTACTGCATCGGCGAT
GGGAAGAGACAAGGATGAACGTTTAAACAGCTTGACACTCTTGGCAGCTCAAGGAGATTTTACTGAGGCCGGGGAATTAA
TGCTTTTTGTGACAGAAAGTCAAGTGGATTTTCTTAAAAGTATGATGAGGGAACAAGGGTATCTCGATACCAAGCAAATG
GCAGGTTCTTTTCAGATGTTGCGAGCCTACGATTTAATTTGGTCAAAAATGGTTCAGGATTACATGCATGGAATGCGGCG
AGGGATGATTGATTTGACGGCTTGGAATGCGGATGCCACGCGGATGCCTTACAAAATGCACAGTGAATATCTTGAAAAAC
TATTTTTAAGGAATGATTTTGCTGAAGGGCGTTATGCTGTAGAAGGAAAGCCAGTGGCTGCTGAGAATATCGAGCGGCCT
GTTTTTGCAGTGAGCACTGAAAAAGACCATGTAGCGCCATGGCAATCAGTATATAAAATACATCTTATGGTGAAAGGAGA
TGTAACCTTTGTTCTCACTGACGGTGGGCATAATGCAGGCATCATCAGTGAACCGGGACATCTCGGGCGCTCTTATCATG
TTCATGAGCATACACAAGGCGAGACGTACTTAAATCCTGAAAGCTGGCTTGCGATGGCAAAGGTACGAGAAGGCTCCTGG
TGGCAAGAATGGCATGAGTGGTTAGTACGACAAAACTCTAAAAAACTCATTCCGCCACCTGTTATGGATCAGTCACTGCC
AGCAGCTCCAGGAACTTATGTGCTTCAGAAATAG

Upstream 100 bases:

>100_bases
TTTAAGAAGAGGCTCCTTACATGACATTGATGCGCTAAATCTTGTGCTATGCTGTATTATATCTTGTTGATTATTGGGCG
TAATACCCAGGATGTCAGCC

Downstream 100 bases:

>100_bases
GACTCATGTTAGGGGGTTATGTTGTTAAATGGTGAGTGCCCCCGTAATTGGGAAAGAGCCATTAAATGGCGCGCTCGGAG
GGACTCGAACCCCCGACACC

Product: polyhydroxyalkanoic synthase

Products: NA

Alternate protein names: PHA polymerase; PHA synthase; Polyhydroxyalkanoic acid synthase [H]

Number of amino acids: Translated: 597; Mature: 597

Protein sequence:

>597_residues
MKGLEKQCCSKERILTQSQELQEGVDFSCCVPVESTSSNSFFSFFTRLTQANLAKWTAGISPAAIGSSYSTWLWQLAQSP
GVLWELAFYPVLHAKDCINNIVCVERAADGKDVRFKKNSWQPMPWRLFAEGFLQMEDWWRRATTDVPGLPKPVERTVSFW
ARQCLDALSPSNFAWSNPDLFHETMRTGGLNLIQGTQIALEDWLEKLAGAPPTGSEHFIPGQHVAITPGRVVFQNHLIEL
IQYESHTKTVYKEPILTFPAWIMKYYILDLSPHNSMVKWLVSQGHTVFIISWRNPDKEDRDLGMDDYYRQGAMAAIDTVS
TLLPGTKINLMGYCLGGTLAMITASAMGRDKDERLNSLTLLAAQGDFTEAGELMLFVTESQVDFLKSMMREQGYLDTKQM
AGSFQMLRAYDLIWSKMVQDYMHGMRRGMIDLTAWNADATRMPYKMHSEYLEKLFLRNDFAEGRYAVEGKPVAAENIERP
VFAVSTEKDHVAPWQSVYKIHLMVKGDVTFVLTDGGHNAGIISEPGHLGRSYHVHEHTQGETYLNPESWLAMAKVREGSW
WQEWHEWLVRQNSKKLIPPPVMDQSLPAAPGTYVLQK

Sequences:

>Translated_597_residues
MKGLEKQCCSKERILTQSQELQEGVDFSCCVPVESTSSNSFFSFFTRLTQANLAKWTAGISPAAIGSSYSTWLWQLAQSP
GVLWELAFYPVLHAKDCINNIVCVERAADGKDVRFKKNSWQPMPWRLFAEGFLQMEDWWRRATTDVPGLPKPVERTVSFW
ARQCLDALSPSNFAWSNPDLFHETMRTGGLNLIQGTQIALEDWLEKLAGAPPTGSEHFIPGQHVAITPGRVVFQNHLIEL
IQYESHTKTVYKEPILTFPAWIMKYYILDLSPHNSMVKWLVSQGHTVFIISWRNPDKEDRDLGMDDYYRQGAMAAIDTVS
TLLPGTKINLMGYCLGGTLAMITASAMGRDKDERLNSLTLLAAQGDFTEAGELMLFVTESQVDFLKSMMREQGYLDTKQM
AGSFQMLRAYDLIWSKMVQDYMHGMRRGMIDLTAWNADATRMPYKMHSEYLEKLFLRNDFAEGRYAVEGKPVAAENIERP
VFAVSTEKDHVAPWQSVYKIHLMVKGDVTFVLTDGGHNAGIISEPGHLGRSYHVHEHTQGETYLNPESWLAMAKVREGSW
WQEWHEWLVRQNSKKLIPPPVMDQSLPAAPGTYVLQK
>Mature_597_residues
MKGLEKQCCSKERILTQSQELQEGVDFSCCVPVESTSSNSFFSFFTRLTQANLAKWTAGISPAAIGSSYSTWLWQLAQSP
GVLWELAFYPVLHAKDCINNIVCVERAADGKDVRFKKNSWQPMPWRLFAEGFLQMEDWWRRATTDVPGLPKPVERTVSFW
ARQCLDALSPSNFAWSNPDLFHETMRTGGLNLIQGTQIALEDWLEKLAGAPPTGSEHFIPGQHVAITPGRVVFQNHLIEL
IQYESHTKTVYKEPILTFPAWIMKYYILDLSPHNSMVKWLVSQGHTVFIISWRNPDKEDRDLGMDDYYRQGAMAAIDTVS
TLLPGTKINLMGYCLGGTLAMITASAMGRDKDERLNSLTLLAAQGDFTEAGELMLFVTESQVDFLKSMMREQGYLDTKQM
AGSFQMLRAYDLIWSKMVQDYMHGMRRGMIDLTAWNADATRMPYKMHSEYLEKLFLRNDFAEGRYAVEGKPVAAENIERP
VFAVSTEKDHVAPWQSVYKIHLMVKGDVTFVLTDGGHNAGIISEPGHLGRSYHVHEHTQGETYLNPESWLAMAKVREGSW
WQEWHEWLVRQNSKKLIPPPVMDQSLPAAPGTYVLQK

Specific function: Unknown

COG id: COG3243

COG function: function code I; Poly(3-hydroxyalkanoate) synthetase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHA/PHB synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010963
- InterPro:   IPR010941 [H]

Pfam domain/function: PF07167 PhaC_N [H]

EC number: NA

Molecular weight: Translated: 67858; Mature: 67858

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLEKQCCSKERILTQSQELQEGVDFSCCVPVESTSSNSFFSFFTRLTQANLAKWTAGI
CCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
SPAAIGSSYSTWLWQLAQSPGVLWELAFYPVLHAKDCINNIVCVERAADGKDVRFKKNSW
CHHHCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCEEEEEECCCCCCEEEECCCC
QPMPWRLFAEGFLQMEDWWRRATTDVPGLPKPVERTVSFWARQCLDALSPSNFAWSNPDL
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
FHETMRTGGLNLIQGTQIALEDWLEKLAGAPPTGSEHFIPGQHVAITPGRVVFQNHLIEL
HHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHH
IQYESHTKTVYKEPILTFPAWIMKYYILDLSPHNSMVKWLVSQGHTVFIISWRNPDKEDR
HHHCCHHHHHHHCCHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCC
DLGMDDYYRQGAMAAIDTVSTLLPGTKINLMGYCLGGTLAMITASAMGRDKDERLNSLTL
CCCCHHHHHCCHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHCCCHHHHHCEEEE
LAAQGDFTEAGELMLFVTESQVDFLKSMMREQGYLDTKQMAGSFQMLRAYDLIWSKMVQD
EEECCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YMHGMRRGMIDLTAWNADATRMPYKMHSEYLEKLFLRNDFAEGRYAVEGKPVAAENIERP
HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCC
VFAVSTEKDHVAPWQSVYKIHLMVKGDVTFVLTDGGHNAGIISEPGHLGRSYHVHEHTQG
EEEEECCCCCCCCHHHEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCC
ETYLNPESWLAMAKVREGSWWQEWHEWLVRQNSKKLIPPPVMDQSLPAAPGTYVLQK
CCEECHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECC
>Mature Secondary Structure
MKGLEKQCCSKERILTQSQELQEGVDFSCCVPVESTSSNSFFSFFTRLTQANLAKWTAGI
CCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
SPAAIGSSYSTWLWQLAQSPGVLWELAFYPVLHAKDCINNIVCVERAADGKDVRFKKNSW
CHHHCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCEEEEEECCCCCCEEEECCCC
QPMPWRLFAEGFLQMEDWWRRATTDVPGLPKPVERTVSFWARQCLDALSPSNFAWSNPDL
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
FHETMRTGGLNLIQGTQIALEDWLEKLAGAPPTGSEHFIPGQHVAITPGRVVFQNHLIEL
HHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHH
IQYESHTKTVYKEPILTFPAWIMKYYILDLSPHNSMVKWLVSQGHTVFIISWRNPDKEDR
HHHCCHHHHHHHCCHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCC
DLGMDDYYRQGAMAAIDTVSTLLPGTKINLMGYCLGGTLAMITASAMGRDKDERLNSLTL
CCCCHHHHHCCHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHCCCHHHHHCEEEE
LAAQGDFTEAGELMLFVTESQVDFLKSMMREQGYLDTKQMAGSFQMLRAYDLIWSKMVQD
EEECCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YMHGMRRGMIDLTAWNADATRMPYKMHSEYLEKLFLRNDFAEGRYAVEGKPVAAENIERP
HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCC
VFAVSTEKDHVAPWQSVYKIHLMVKGDVTFVLTDGGHNAGIISEPGHLGRSYHVHEHTQG
EEEEECCCCCCCCHHHEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCC
ETYLNPESWLAMAKVREGSWWQEWHEWLVRQNSKKLIPPPVMDQSLPAAPGTYVLQK
CCEECHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7763712 [H]