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The map label for this gene is yicC [H]

Identifier: 148359583

GI number: 148359583

Start: 2365755

End: 2366390

Strand: Reverse

Name: yicC [H]

Synonym: LPC_1495

Alternate gene names: 148359583

Gene position: 2366390-2365755 (Counterclockwise)

Preceding gene: 148359585

Following gene: 148359582

Centisome position: 66.17

GC content: 39.78

Gene sequence:

>636_bases
ATGCTTATTAATATAGGTACGATTAATGCATTACTTGATTTAAGCGGTAAATTATCCGCCTCTCATCATCTGGCTAATGA
TATGACTGTCAGTCAAGTGCTTTCATGGCCGGGTGTTGTGGAGGCTAATCCGCTGGATATGGAGGAGTTGTCTCAAATTG
CTTTGGAGTTATTTCAGAAAAGTATCGATAAATTGTGTGAAGTCAGAGCTGGAGAAGGCAGGTCATTAAAGGCATATGTT
GAAGACCGATTGCAGGCTTTGCGCCAAGAGGTAATGAAATCCAAAAGCATTATGGTTTCAATGAGTGCCAAGACTAAAGA
TAAATTACTTACGCGTTTGCATGAATTGCAAATGGACGTTACAGAGGCGCGTGTAGAGCAAGAAATTGCTTTGCTATTAG
CAAAGCTTGATGTGAGTGAGGAGCTGGACAGATTAGAGACTCATATAGCGGAAGTAAACCGCACTTTGAATGCAGAAAAG
GTGACGGGTAGAAGACTGGATTTTTTAATGCAAGAATTAAATAGAGAGGCGAATACCCTAAGCTCAAAATCAGATTCAGC
AGAGTTAACTTTATGTGCTGTTGAAATGAAAGTATTGATTGAGCAGATGCGCGAACAAATTCAGAATTTTGAGTAA

Upstream 100 bases:

>100_bases
TCTTGAAGCAGAGTTAAGATCCTTGCTTCGGGATAAGATACATAGGGGTAAACTAGAGTGCCATCTAAAGTACAAGGACA
CAAGTTGTGATAATCGGTCT

Downstream 100 bases:

>100_bases
ATGATATGGCTAGTGATAATTCAGGAAATTTATATATTGTTGCAGCACCCTCCGGAGGAGGAAAAACAAGTTTGGTGAAA
AAACTCATTGAAATGGTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MLINIGTINALLDLSGKLSASHHLANDMTVSQVLSWPGVVEANPLDMEELSQIALELFQKSIDKLCEVRAGEGRSLKAYV
EDRLQALRQEVMKSKSIMVSMSAKTKDKLLTRLHELQMDVTEARVEQEIALLLAKLDVSEELDRLETHIAEVNRTLNAEK
VTGRRLDFLMQELNREANTLSSKSDSAELTLCAVEMKVLIEQMREQIQNFE

Sequences:

>Translated_211_residues
MLINIGTINALLDLSGKLSASHHLANDMTVSQVLSWPGVVEANPLDMEELSQIALELFQKSIDKLCEVRAGEGRSLKAYV
EDRLQALRQEVMKSKSIMVSMSAKTKDKLLTRLHELQMDVTEARVEQEIALLLAKLDVSEELDRLETHIAEVNRTLNAEK
VTGRRLDFLMQELNREANTLSSKSDSAELTLCAVEMKVLIEQMREQIQNFE
>Mature_211_residues
MLINIGTINALLDLSGKLSASHHLANDMTVSQVLSWPGVVEANPLDMEELSQIALELFQKSIDKLCEVRAGEGRSLKAYV
EDRLQALRQEVMKSKSIMVSMSAKTKDKLLTRLHELQMDVTEARVEQEIALLLAKLDVSEELDRLETHIAEVNRTLNAEK
VTGRRLDFLMQELNREANTLSSKSDSAELTLCAVEMKVLIEQMREQIQNFE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=179, Percent_Identity=45.2513966480447, Blast_Score=154, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 23807; Mature: 23807

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLINIGTINALLDLSGKLSASHHLANDMTVSQVLSWPGVVEANPLDMEELSQIALELFQK
CEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
SIDKLCEVRAGEGRSLKAYVEDRLQALRQEVMKSKSIMVSMSAKTKDKLLTRLHELQMDV
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHH
TEARVEQEIALLLAKLDVSEELDRLETHIAEVNRTLNAEKVTGRRLDFLMQELNREANTL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SSKSDSAELTLCAVEMKVLIEQMREQIQNFE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLINIGTINALLDLSGKLSASHHLANDMTVSQVLSWPGVVEANPLDMEELSQIALELFQK
CEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
SIDKLCEVRAGEGRSLKAYVEDRLQALRQEVMKSKSIMVSMSAKTKDKLLTRLHELQMDV
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHH
TEARVEQEIALLLAKLDVSEELDRLETHIAEVNRTLNAEKVTGRRLDFLMQELNREANTL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SSKSDSAELTLCAVEMKVLIEQMREQIQNFE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2664418; 7686882; 9278503; 1925027 [H]