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The map label for this gene is yciO [H]

Identifier: 148358974

GI number: 148358974

Start: 1656837

End: 1657457

Strand: Direct

Name: yciO [H]

Synonym: LPC_0859

Alternate gene names: 148358974

Gene position: 1656837-1657457 (Clockwise)

Preceding gene: 148358973

Following gene: 148358975

Centisome position: 46.33

GC content: 39.94

Gene sequence:

>621_bases
ATGAGTCAGTTTTTTGCTTTACATCCAGATAATCCTCAAGCACGCTTGTTGAGAAAAGCAGTTTCAATTATTGAAGAAGG
GGGGCTTATCGTTTACCCGACAGATTCTGGCTATGCTTTGGGCTGTAGTTTGGGCAATAAATCAGCCCTGGAGCGTATTC
GCCGCTTACGTCAATTGGATAAGCATCATAATATGACCCTGGTTTGTCGTGACTTATCCCAGTTAGGTACTTATGCAAAG
GTTTCTAATCCAATTTTTAGATTATTGAAGGCTTTTACTCCAGGCTCTTATACCTTTATTCTTAATGCTACACATGAAGT
ACCTCGTTTGATGCTTCACCCAAAACGAAGAACATTGGGGTTAAGAGTACCTGATAACACGATTACTTTGTCTTTATTGG
AGTGTCTGGAAGCCCCTTTAATGAGCACCACTTTAATTTTACCAGGGGCTGAAGCGCCATTAAGCGAGCCCGAAGCAATT
AAAGATTTATTAGGCAACCAAATTGATTTAATAATTGATGGTGGAAACTGTGGTCATGAACCCACTACAGTAGTAGATTT
AACTGGAGATTATCCGGTAATTATAAGAGAGGGAAAAGGAGATCCTGAACCCTTTAGATAA

Upstream 100 bases:

>100_bases
ATAGTGACGCTCAATCTTGTATAAATCTGGGGCGTCAGCGACAATTACCAATAATATGCACGCCTATTTGGCAAGAATGG
AACATGAAACAGGGGACTTT

Downstream 100 bases:

>100_bases
TGGCATGCAGCCACAGTTTTGTTAGTATTTAGTGAAAGAGAATTTTATGTACCCCTACCAAGCTAGAGTTGACACCATTG
AATTTTATTTTGTCCAATTA

Product: translation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLSQLGTYAK
VSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAI
KDLLGNQIDLIIDGGNCGHEPTTVVDLTGDYPVIIREGKGDPEPFR

Sequences:

>Translated_206_residues
MSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLSQLGTYAK
VSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAI
KDLLGNQIDLIIDGGNCGHEPTTVVDLTGDYPVIIREGKGDPEPFR
>Mature_205_residues
SQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLSQLGTYAKV
SNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAIK
DLLGNQIDLIIDGGNCGHEPTTVVDLTGDYPVIIREGKGDPEPFR

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=60.9756097560976, Blast_Score=263, Evalue=5e-72,
Organism=Drosophila melanogaster, GI78707274, Length=179, Percent_Identity=26.2569832402235, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22736; Mature: 22604

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLD
CCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHH
KHHNMTLVCRDLSQLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLG
HHCCEEEEEECHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCEEE
LRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGHE
EECCCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCC
PTTVVDLTGDYPVIIREGKGDPEPFR
CCEEEEECCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
SQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLD
CCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHH
KHHNMTLVCRDLSQLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLG
HHCCEEEEEECHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCEEE
LRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGHE
EECCCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCC
PTTVVDLTGDYPVIIREGKGDPEPFR
CCEEEEECCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]