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The map label for this gene is yciR [C]

Identifier: 148358887

GI number: 148358887

Start: 1566017

End: 1567597

Strand: Reverse

Name: yciR [C]

Synonym: LPC_0771

Alternate gene names: 148358887

Gene position: 1567597-1566017 (Counterclockwise)

Preceding gene: 148358888

Following gene: 148358881

Centisome position: 43.83

GC content: 36.24

Gene sequence:

>1581_bases
ATGTGGGGGATTTCTCCAGGGTTTATTGACAGTCATAATGACACAGAAACAATTCAATATGTATTGAATCAGCTTAAAAA
TCCGGAAGAATTTTTAAAACAAATTAAAGAACTATACAACAATCCAAAGCAGGAAAGCTTTGATGAATTGCATTTCAAGG
ACGGTAAAATCTTTGAGAGATACTCACAACCACATTGGTTAGACAATAAAATTGTAGGACGTGTTTGGAGTTATAGAGAT
GTGACCTTAAGAACCAGATTAGCCTATCAAGCCAATCATGATTCTCTAACTGGTTTACCCAATCGTACAGCTCTTTACGA
TCGCCTGGAGCACGCGATTAATTACTGTAAACGATTAAACACCTCATTATCGGTATTTTTTCTGGATATTGATAATTTTA
AATTAATTAATGACAGCCTGGGCCATGATGCCGGTGATATATTATTGTATGAATTTTCCAGGCGTCTTAAAGGATGCATA
CGTCATAGCGATACAGTTGCTCGATTTGGCGGTGATGAGTTTGTTTTGTTATTGATAACCACTGAACCTAAAGATGTTAT
TTTAGTAGCGCAAAACATTTTAAAGGCTGTAGCGCAGCCTATCAAATTGCCTACCCAGGAAGTCATAGTAACGACAAGTA
TAGGAATTAGCCTTTTCCCTAAAGATGGCATTGATGCAAACACCTTACTCAAAAATTCCGATACTGCAATGTACCTGGCT
AAAAAGGAAGGGCGCAATAATTTTCAATTTTATAATAATTCGATCAATCAACAATCGCTCAAACGCCTTGAGATACAAAC
ACAGATACACAATGCAATTAAAAATAATGAATTTTTTATTCTTTACCAGCCCATTTATAATTTACGTAACGGTGAATTAG
TAGGTGCCGAAGCCCTGATACGTTGGGGGCATCCTGCAATAGGGCTCCTCTCTCCGGATGAATTTATTCCTATTGCTGAA
GAAACCGGGTTGATTAACCAGGTTGGCGAGTGGGTATTAAGAAATGCCTGTATTCAAAATAAAACCTGGCAGCTTATGGG
GTTACCGCATATTAGTATTTCCGTTAACGTCTCTTGGAGACAGTTAAAAAATAGCAATTTTATCGAGATTGCAGAATCTG
TATTAAAAGAATCCAGACTAGATCCTCAGTATTTGGAAATTGAATTCACCGAAAGCACTATGATACAAAAATCAACGCCC
ATTGATTCGATGTTAGTAAAAATTTCCCAGTTAGGTATTAAAATGGCAATTGATGATTTTGGTACGGGTTACTCAAACTT
AAGTTATTTAAAGACTTTCCCCTTCAATAAACTTAAAATTGATCGTTCATTTATTCAAAACTGCACCACTAACCCAAATG
ATGCTTCCATAGTTGAAGCAATTATTGCCATGGCCCATAGCCTCGAACTCAAAGTATTGGCAGAGGGAGTTGACACGATT
GATAAAGCGTTTTTTATGCATCAACATGGCTGTGATGAAGTACAAGGTTTCCTTTATGGCTTACCTGTTAAAGCTGATCA
ATTTGTGAAATTAATGCAAAAAAATAGAATCCGCCATTCAAAATTTATTAATAAGACATAA

Upstream 100 bases:

>100_bases
CAAATCACTGAAAAATCATACTAAATGATAATTACTGGTCAAAAAGGTATGATCTTGCCCTGAAGGTAATATTGAATTCT
GCAATCAGCAATTTCTCAAG

Downstream 100 bases:

>100_bases
GGTTATTGTTTCTTTTATTACTATAAAAAAAAATACTACCGACTACTCATCAATTAAACTAGCTCATTTAAACCAGTATT
TTAAACACACAACAAATTAT

Product: inner membrane protein/sensory box protein LssE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MWGISPGFIDSHNDTETIQYVLNQLKNPEEFLKQIKELYNNPKQESFDELHFKDGKIFERYSQPHWLDNKIVGRVWSYRD
VTLRTRLAYQANHDSLTGLPNRTALYDRLEHAINYCKRLNTSLSVFFLDIDNFKLINDSLGHDAGDILLYEFSRRLKGCI
RHSDTVARFGGDEFVLLLITTEPKDVILVAQNILKAVAQPIKLPTQEVIVTTSIGISLFPKDGIDANTLLKNSDTAMYLA
KKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRNGELVGAEALIRWGHPAIGLLSPDEFIPIAE
ETGLINQVGEWVLRNACIQNKTWQLMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYLEIEFTESTMIQKSTP
IDSMLVKISQLGIKMAIDDFGTGYSNLSYLKTFPFNKLKIDRSFIQNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTI
DKAFFMHQHGCDEVQGFLYGLPVKADQFVKLMQKNRIRHSKFINKT

Sequences:

>Translated_526_residues
MWGISPGFIDSHNDTETIQYVLNQLKNPEEFLKQIKELYNNPKQESFDELHFKDGKIFERYSQPHWLDNKIVGRVWSYRD
VTLRTRLAYQANHDSLTGLPNRTALYDRLEHAINYCKRLNTSLSVFFLDIDNFKLINDSLGHDAGDILLYEFSRRLKGCI
RHSDTVARFGGDEFVLLLITTEPKDVILVAQNILKAVAQPIKLPTQEVIVTTSIGISLFPKDGIDANTLLKNSDTAMYLA
KKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRNGELVGAEALIRWGHPAIGLLSPDEFIPIAE
ETGLINQVGEWVLRNACIQNKTWQLMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYLEIEFTESTMIQKSTP
IDSMLVKISQLGIKMAIDDFGTGYSNLSYLKTFPFNKLKIDRSFIQNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTI
DKAFFMHQHGCDEVQGFLYGLPVKADQFVKLMQKNRIRHSKFINKT
>Mature_526_residues
MWGISPGFIDSHNDTETIQYVLNQLKNPEEFLKQIKELYNNPKQESFDELHFKDGKIFERYSQPHWLDNKIVGRVWSYRD
VTLRTRLAYQANHDSLTGLPNRTALYDRLEHAINYCKRLNTSLSVFFLDIDNFKLINDSLGHDAGDILLYEFSRRLKGCI
RHSDTVARFGGDEFVLLLITTEPKDVILVAQNILKAVAQPIKLPTQEVIVTTSIGISLFPKDGIDANTLLKNSDTAMYLA
KKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRNGELVGAEALIRWGHPAIGLLSPDEFIPIAE
ETGLINQVGEWVLRNACIQNKTWQLMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYLEIEFTESTMIQKSTP
IDSMLVKISQLGIKMAIDDFGTGYSNLSYLKTFPFNKLKIDRSFIQNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTI
DKAFFMHQHGCDEVQGFLYGLPVKADQFVKLMQKNRIRHSKFINKT

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=429, Percent_Identity=38.2284382284382, Blast_Score=314, Evalue=1e-86,
Organism=Escherichia coli, GI87081921, Length=419, Percent_Identity=31.5035799522673, Blast_Score=239, Evalue=4e-64,
Organism=Escherichia coli, GI226510982, Length=419, Percent_Identity=30.0715990453461, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI1790496, Length=254, Percent_Identity=32.6771653543307, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI87081743, Length=250, Percent_Identity=33.2, Blast_Score=142, Evalue=7e-35,
Organism=Escherichia coli, GI1786507, Length=300, Percent_Identity=30.3333333333333, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=30.2325581395349, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI87081980, Length=267, Percent_Identity=30.7116104868914, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87081845, Length=264, Percent_Identity=28.7878787878788, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=31.9502074688797, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI1788849, Length=252, Percent_Identity=31.3492063492063, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1788381, Length=422, Percent_Identity=25.1184834123223, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=33.5365853658537, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87082096, Length=441, Percent_Identity=25.8503401360544, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=34.3949044585987, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=32.9411764705882, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=35.2601156069364, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=175, Percent_Identity=33.1428571428571, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=37.7245508982036, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=34.1317365269461, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=34.8571428571429, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1789650, Length=433, Percent_Identity=20.0923787528868, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=30.8176100628931, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081974, Length=149, Percent_Identity=31.5436241610738, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787410, Length=126, Percent_Identity=31.7460317460317, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 60225; Mature: 60225

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWGISPGFIDSHNDTETIQYVLNQLKNPEEFLKQIKELYNNPKQESFDELHFKDGKIFER
CCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHH
YSQPHWLDNKIVGRVWSYRDVTLRTRLAYQANHDSLTGLPNRTALYDRLEHAINYCKRLN
CCCCCCCCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
TSLSVFFLDIDNFKLINDSLGHDAGDILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLIT
CCEEEEEEECCCEEEECHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEEE
TEPKDVILVAQNILKAVAQPIKLPTQEVIVTTSIGISLFPKDGIDANTLLKNSDTAMYLA
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEECCCCCCCHHHEECCCCCEEEEE
KKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRNGELVGAEALI
ECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECHHHHH
RWGHPAIGLLSPDEFIPIAEETGLINQVGEWVLRNACIQNKTWQLMGLPHISISVNVSWR
HCCCCCEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEEEEHH
QLKNSNFIEIAESVLKESRLDPQYLEIEFTESTMIQKSTPIDSMLVKISQLGIKMAIDDF
HHCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHCCEEEEECCC
GTGYSNLSYLKTFPFNKLKIDRSFIQNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTI
CCCCCCCCHHEECCCCCEEECHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH
DKAFFMHQHGCDEVQGFLYGLPVKADQFVKLMQKNRIRHSKFINKT
HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCC
>Mature Secondary Structure
MWGISPGFIDSHNDTETIQYVLNQLKNPEEFLKQIKELYNNPKQESFDELHFKDGKIFER
CCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHH
YSQPHWLDNKIVGRVWSYRDVTLRTRLAYQANHDSLTGLPNRTALYDRLEHAINYCKRLN
CCCCCCCCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
TSLSVFFLDIDNFKLINDSLGHDAGDILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLIT
CCEEEEEEECCCEEEECHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEEE
TEPKDVILVAQNILKAVAQPIKLPTQEVIVTTSIGISLFPKDGIDANTLLKNSDTAMYLA
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEECCCCCCCHHHEECCCCCEEEEE
KKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRNGELVGAEALI
ECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECHHHHH
RWGHPAIGLLSPDEFIPIAEETGLINQVGEWVLRNACIQNKTWQLMGLPHISISVNVSWR
HCCCCCEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEEEEHH
QLKNSNFIEIAESVLKESRLDPQYLEIEFTESTMIQKSTPIDSMLVKISQLGIKMAIDDF
HHCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHCCEEEEECCC
GTGYSNLSYLKTFPFNKLKIDRSFIQNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTI
CCCCCCCCHHEECCCCCEEECHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH
DKAFFMHQHGCDEVQGFLYGLPVKADQFVKLMQKNRIRHSKFINKT
HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]