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The map label for this gene is ybbD [H]

Identifier: 148358777

GI number: 148358777

Start: 1442252

End: 1443400

Strand: Direct

Name: ybbD [H]

Synonym: LPC_0658

Alternate gene names: 148358777

Gene position: 1442252-1443400 (Clockwise)

Preceding gene: 148358776

Following gene: 148358778

Centisome position: 40.33

GC content: 34.46

Gene sequence:

>1149_bases
ATGAGTTTAGCATTGAAAATCAAGTCAATTATTTTATCTTTTTTTCTTGTTTTGATGGCTACAGTAGCTTGCGCTACACA
AGTGAGTTTGAGAGATAAAATTGGGCAAATGTTAATATTAGGATTCCAGGGCAAAGTGGTTGACGAGAAATCACCTATTG
CCCAGGCAATTGAGAAAAACAACATTGGTGGTGTTATTCTTTTTGATTTTAATCAGCAGTCACAAACTTTTGATAAAAAT
ATAGAAAGTCCGGAACAAGTCAACCAATTAAATAATCAGTTACAAACACTTACGCAAAAAGCCAACCGTAAATATCATAG
AGATAATTTACCATTACTTATTTCTGTTGATTACGAGGGGGGAAACGTTAATCGATTGCATCCCCGTTATGGATTCCCTG
AAATGCCTTCAGCAAAAGACATTGGCTCCATGTCTCTGGAAAGAGCTGATGCATCAGCAGAATTGATGGCAAATACTTTA
AAATCAACAGGATTTAATTTGAATTTTTTCCCTGAATTAGATGTGAATATAAATCCAGATAATCCTATCATAGGCAAAAA
AGACAGGAGTTTCTCTTCGATACCGGAAATTGTCACTCAATACGCGCAACTTTATACAGAGCAATTTATAAAACATCAAA
TACATTGTTCTTATAAACATTTTCCTGGACATGGCAGTTCATTATCTGATTCACATTTGGGTTTTGTAGATATAAGTGAC
ACCTGGAGCGAGCAAGAATTAATCCCTTTTTTACAATTATTATCTCAACCCAATCATTGCGATATGGTGATGATAGCTCA
TATTGTGAATAGAAAACTGGATATGACAGGGCTACCTGCCAGCCTTTCTTACCAGATCATTAACGGATTATTGCGTCATG
ATTTAAAATTTAACGGGGTTGTTATCACCGATGATATGCAAATGAAAGCAATAACGAATTATTATGGATTAGAAACTGCT
GTTACTCTTTCAATTAATGCAGGAGCAGATATGCTAATATTTGGTAATCAATTGGTAGAAAAATTTCAAGACTCGACAGA
AATCATTGACATGATCGAGCAAAAAGTTCGATCGGGAGAGATTTCTGAACAAAGGATTAATGAAGCTTATCAACGAATTG
TAAAAATGAAGAGGTCTTTTAATTATTAG

Upstream 100 bases:

>100_bases
GATGGTGTTAGGTTGATTTTTTTTGTATAACATTTGATTAGTTTGGCTTTAATATGTATAATTGGCGCAAATCGCAATAG
AGAAAATTAATCATTTTCTA

Downstream 100 bases:

>100_bases
AAGTTTTTCTCAATTTACTCTGACAAAAGTATTTTGATAATCTGCGAGCTATAGATAAGCTGAGGTATATATGCGGTGCA
GGTCAATTATCAAAAAAACT

Product: glycosyl hydrolase family transporter 3

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSLALKIKSIILSFFLVLMATVACATQVSLRDKIGQMLILGFQGKVVDEKSPIAQAIEKNNIGGVILFDFNQQSQTFDKN
IESPEQVNQLNNQLQTLTQKANRKYHRDNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTL
KSTGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKHQIHCSYKHFPGHGSSLSDSHLGFVDISD
TWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRHDLKFNGVVITDDMQMKAITNYYGLETA
VTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY

Sequences:

>Translated_382_residues
MSLALKIKSIILSFFLVLMATVACATQVSLRDKIGQMLILGFQGKVVDEKSPIAQAIEKNNIGGVILFDFNQQSQTFDKN
IESPEQVNQLNNQLQTLTQKANRKYHRDNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTL
KSTGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKHQIHCSYKHFPGHGSSLSDSHLGFVDISD
TWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRHDLKFNGVVITDDMQMKAITNYYGLETA
VTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY
>Mature_381_residues
SLALKIKSIILSFFLVLMATVACATQVSLRDKIGQMLILGFQGKVVDEKSPIAQAIEKNNIGGVILFDFNQQSQTFDKNI
ESPEQVNQLNNQLQTLTQKANRKYHRDNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTLK
STGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKHQIHCSYKHFPGHGSSLSDSHLGFVDISDT
WSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRHDLKFNGVVITDDMQMKAITNYYGLETAV
TLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=284, Percent_Identity=28.169014084507, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 43116; Mature: 42985

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLALKIKSIILSFFLVLMATVACATQVSLRDKIGQMLILGFQGKVVDEKSPIAQAIEKN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHC
NIGGVILFDFNQQSQTFDKNIESPEQVNQLNNQLQTLTQKANRKYHRDNLPLLISVDYEG
CCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
GNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTLKSTGFNLNFFPELDVNINPD
CCCCEECCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEECCC
NPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKHQIHCSYKHFPGHGSSLSDSHLGFVDISD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCEEEECCC
TWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRHDLKFNGV
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
VITDDMQMKAITNYYGLETAVTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGE
EEECCCHHHHHHHHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCC
ISEQRINEAYQRIVKMKRSFNY
CHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLALKIKSIILSFFLVLMATVACATQVSLRDKIGQMLILGFQGKVVDEKSPIAQAIEKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHC
NIGGVILFDFNQQSQTFDKNIESPEQVNQLNNQLQTLTQKANRKYHRDNLPLLISVDYEG
CCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
GNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTLKSTGFNLNFFPELDVNINPD
CCCCEECCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEECCC
NPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKHQIHCSYKHFPGHGSSLSDSHLGFVDISD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCEEEECCC
TWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRHDLKFNGV
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
VITDDMQMKAITNYYGLETAVTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGE
EEECCCHHHHHHHHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCC
ISEQRINEAYQRIVKMKRSFNY
CHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]