Click here to switch to the map view.

The map label for this gene is csrA [H]

Identifier: 148358307

GI number: 148358307

Start: 185531

End: 185797

Strand: Direct

Name: csrA [H]

Synonym: LPC_0169

Alternate gene names: 148358307

Gene position: 185531-185797 (Clockwise)

Preceding gene: 148358306

Following gene: 148358308

Centisome position: 5.19

GC content: 41.2

Gene sequence:

>267_bases
ATGTTGGTTTTAACAAGAAGAGTTGGGGAGTCTGTTGTGATTCACGATGATGTGTATTGCACGATTGTAGGCTATCGAGA
TGGTGAAGTACGCCTTGCCTTTGATGCCCCTAGATCCATTCCTGTTCATCGAGATGAAATTCAACGCCGCATTCACCGTG
CACGCATAAAAGATAATTGGTTTATCGATAAGGCAGCGAATAAAGAAAGCATTGTCGATAGGCTCATCAATAAATTTAAA
AACAGCACTTCTGCCGTTAAAGCTTAA

Upstream 100 bases:

>100_bases
CACACCCAAAGAATATACACCTGCCTCAAAAGAGGTCGTAAAAACAAACATCAAGCAATGCAAAGCATTTTTATTTAAAT
AAACCAAAAGGAGAAAAGAC

Downstream 100 bases:

>100_bases
GGAAATGCTTTTATGAATGTAGATAACGAGCCATTGGTGACAGTCAAAGACCGAGCCAAAGAAAAACTAAGGCGTGAATT
AGGTGATTTGATTGGAAATG

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MLVLTRRVGESVVIHDDVYCTIVGYRDGEVRLAFDAPRSIPVHRDEIQRRIHRARIKDNWFIDKAANKESIVDRLINKFK
NSTSAVKA

Sequences:

>Translated_88_residues
MLVLTRRVGESVVIHDDVYCTIVGYRDGEVRLAFDAPRSIPVHRDEIQRRIHRARIKDNWFIDKAANKESIVDRLINKFK
NSTSAVKA
>Mature_88_residues
MLVLTRRVGESVVIHDDVYCTIVGYRDGEVRLAFDAPRSIPVHRDEIQRRIHRARIKDNWFIDKAANKESIVDRLINKFK
NSTSAVKA

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

Organism=Escherichia coli, GI1789047, Length=61, Percent_Identity=40.9836065573771, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 10191; Mature: 10191

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLTRRVGESVVIHDDVYCTIVGYRDGEVRLAFDAPRSIPVHRDEIQRRIHRARIKDNW
CEEEECCCCCEEEEECCEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCE
FIDKAANKESIVDRLINKFKNSTSAVKA
EEECCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLVLTRRVGESVVIHDDVYCTIVGYRDGEVRLAFDAPRSIPVHRDEIQRRIHRARIKDNW
CEEEECCCCCEEEEECCEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCE
FIDKAANKESIVDRLINKFKNSTSAVKA
EEECCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]