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The map label for this gene is trbB [H]

Identifier: 148358308

GI number: 148358308

Start: 185810

End: 186775

Strand: Direct

Name: trbB [H]

Synonym: LPC_0170

Alternate gene names: 148358308

Gene position: 185810-186775 (Clockwise)

Preceding gene: 148358307

Following gene: 148358309

Centisome position: 5.2

GC content: 45.55

Gene sequence:

>966_bases
ATGAATGTAGATAACGAGCCATTGGTGACAGTCAAAGACCGAGCCAAAGAAAAACTAAGGCGTGAATTAGGTGATTTGAT
TGGAAATGTCTTAAATGATCCAAAAACCGTAGAAATCATGTGTAACGCCGATGGCAAAATTTGGCAGGAGCGTCTTGGTG
AATCGATGCGCTGCATTGGAAATATCACCGTGGCGCGAGCTGAAAGCATTATCAAAACCATCGCAGGCTTTCATGGAAAA
GAAGTGACTCGATTTAAGCCCATGCTTGAAGGTGAATTGCCTCTGGATGGTTCGCGCTTTGCGGGCCAACTTCCACCCGT
TGTATCCGGACCAACCTTTGCTATCCGCAAAAAAGCCATATCGGTTTTTACCCTTGATGACTATGTGCAGTCGGAAATTA
TGACGCCTGCGCAGTGTGAGGTGATTCAACAAGCAGTAGCAAATCATCGCAATATTTTAGTCATTGGCGGGACAGGTTCA
GGTAAAACCACTTTAGTGAATGCCATTATTGATGAAATGGTAAAAAGCGCTCCAGAAGAGCGAATTTTTATCATAGAAGA
TACGGGCGAAATCCAGTGTACGGCTGAAAACTGCATTCAATACCACACCACACTCGATGTCAGCATGACTCAGCTTTTAA
AAACCACACTCAGGATGCGCCCTGACAGAATTCTTGTTGGTGAGGTTCGAGGTGGTGAAGCTTTAGATTTACTGGATGCA
TGGAATACCGGCCATGAAGGCGGTGCAGCCACTTTGCATGCAAACAACTGCATTGCAGGCCTTCATCGGTTGAAGTCACT
CATCACCCGAAATCCAGCAGCGCCTTCTGAAATCGAACCTTTAATTGGCGAGGCGGTTCATTGTGTCGTGCATATCGCAA
GAACGCCCGCGGGTCGCAGAATTGAAGAAATCATATCTATTCATGGCTTTGATAAAGGCCGGTATCGAATCGAAAAACTT
GTTTGA

Upstream 100 bases:

>100_bases
GTTTATCGATAAGGCAGCGAATAAAGAAAGCATTGTCGATAGGCTCATCAATAAATTTAAAAACAGCACTTCTGCCGTTA
AAGCTTAAGGAAATGCTTTT

Downstream 100 bases:

>100_bases
AGGAGAGCATGAATGACTCAGGTAAGCACCTTAAATTATAAAAAAATGTGGATGATGGGATTAGTGGTTCTGTTTTTATT
ATTTATTACCCATCCAGCAA

Product: conjugal transfer ATPase TrbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MNVDNEPLVTVKDRAKEKLRRELGDLIGNVLNDPKTVEIMCNADGKIWQERLGESMRCIGNITVARAESIIKTIAGFHGK
EVTRFKPMLEGELPLDGSRFAGQLPPVVSGPTFAIRKKAISVFTLDDYVQSEIMTPAQCEVIQQAVANHRNILVIGGTGS
GKTTLVNAIIDEMVKSAPEERIFIIEDTGEIQCTAENCIQYHTTLDVSMTQLLKTTLRMRPDRILVGEVRGGEALDLLDA
WNTGHEGGAATLHANNCIAGLHRLKSLITRNPAAPSEIEPLIGEAVHCVVHIARTPAGRRIEEIISIHGFDKGRYRIEKL
V

Sequences:

>Translated_321_residues
MNVDNEPLVTVKDRAKEKLRRELGDLIGNVLNDPKTVEIMCNADGKIWQERLGESMRCIGNITVARAESIIKTIAGFHGK
EVTRFKPMLEGELPLDGSRFAGQLPPVVSGPTFAIRKKAISVFTLDDYVQSEIMTPAQCEVIQQAVANHRNILVIGGTGS
GKTTLVNAIIDEMVKSAPEERIFIIEDTGEIQCTAENCIQYHTTLDVSMTQLLKTTLRMRPDRILVGEVRGGEALDLLDA
WNTGHEGGAATLHANNCIAGLHRLKSLITRNPAAPSEIEPLIGEAVHCVVHIARTPAGRRIEEIISIHGFDKGRYRIEKL
V
>Mature_321_residues
MNVDNEPLVTVKDRAKEKLRRELGDLIGNVLNDPKTVEIMCNADGKIWQERLGESMRCIGNITVARAESIIKTIAGFHGK
EVTRFKPMLEGELPLDGSRFAGQLPPVVSGPTFAIRKKAISVFTLDDYVQSEIMTPAQCEVIQQAVANHRNILVIGGTGS
GKTTLVNAIIDEMVKSAPEERIFIIEDTGEIQCTAENCIQYHTTLDVSMTQLLKTTLRMRPDRILVGEVRGGEALDLLDA
WNTGHEGGAATLHANNCIAGLHRLKSLITRNPAAPSEIEPLIGEAVHCVVHIARTPAGRRIEEIISIHGFDKGRYRIEKL
V

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=120, Percent_Identity=35, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 35269; Mature: 35269

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVDNEPLVTVKDRAKEKLRRELGDLIGNVLNDPKTVEIMCNADGKIWQERLGESMRCIG
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCHHHHHHH
NITVARAESIIKTIAGFHGKEVTRFKPMLEGELPLDGSRFAGQLPPVVSGPTFAIRKKAI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHE
SVFTLDDYVQSEIMTPAQCEVIQQAVANHRNILVIGGTGSGKTTLVNAIIDEMVKSAPEE
EEEEHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
RIFIIEDTGEIQCTAENCIQYHTTLDVSMTQLLKTTLRMRPDRILVGEVRGGEALDLLDA
EEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
WNTGHEGGAATLHANNCIAGLHRLKSLITRNPAAPSEIEPLIGEAVHCVVHIARTPAGRR
CCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
IEEIISIHGFDKGRYRIEKLV
HHHHHHHCCCCCCHHHHHHCC
>Mature Secondary Structure
MNVDNEPLVTVKDRAKEKLRRELGDLIGNVLNDPKTVEIMCNADGKIWQERLGESMRCIG
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCHHHHHHH
NITVARAESIIKTIAGFHGKEVTRFKPMLEGELPLDGSRFAGQLPPVVSGPTFAIRKKAI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHE
SVFTLDDYVQSEIMTPAQCEVIQQAVANHRNILVIGGTGSGKTTLVNAIIDEMVKSAPEE
EEEEHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
RIFIIEDTGEIQCTAENCIQYHTTLDVSMTQLLKTTLRMRPDRILVGEVRGGEALDLLDA
EEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
WNTGHEGGAATLHANNCIAGLHRLKSLITRNPAAPSEIEPLIGEAVHCVVHIARTPAGRR
CCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
IEEIISIHGFDKGRYRIEKLV
HHHHHHHCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]