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The map label for this gene is rodA [H]

Identifier: 148285173

GI number: 148285173

Start: 2117129

End: 2118256

Strand: Direct

Name: rodA [H]

Synonym: OTBS_2171

Alternate gene names: 148285173

Gene position: 2117129-2118256 (Clockwise)

Preceding gene: 148285172

Following gene: 148285174

Centisome position: 99.53

GC content: 30.59

Gene sequence:

>1128_bases
ATGCAGATATACCAGAATAGATCATTAGTTAAGGATAAACTTAAAATGTTGCCATTTACATTAATATTGACAATATGCAT
AGTTTGTATTTTTGGATTGATAACATTATACTCTGCAACTGGTTGTAAGTTTTTTTTGCGCGCTCATAAGCAAATTCTAT
ATTATATTACGTTTTTACCAATTGGAATACTGTTAGCCTTAGTAGATGTAAGATATATATATAAATACTCGTATATTTTA
TATTTTATTGTGTGTGTTGTATTAGTTATGGTTGAGATTGCAGGATATAAGGTAATGGGGGCAAGGAGATGGATAGGTAT
TTCTGCTCTCAGAATTCAACCTTCTGAAGTTGCAAAAATTTCTGTCATTCTAATGCTAGCTAGATATTTTCATGACATTA
GTGTTTATAAACTAAAAAAGATACAGTATAGTATAGTTCCACTATTATTAATAGCGATACCAATAACGTTAGTAATAAAA
CAACCAGATTTAGGCACTGGAATAATTATACTGCTTATTACAGCATCAATGTTTTTTGCAGCAGGAATAACACTATGGAT
ATTTATTATTACATTTATAGCTGGAATAATTCTCTTGCCTATTATTTGGAACCTTTTACATAATTACCAAAAGAAACGCA
TTAAAGTTTTTCTTAATCCAGAACTTGATCCACTAGGTTCTGGGTACAATATTATTCAGTCTAAAGTTGCGATAGGTTCC
GGAGGGTTGAGCGGTAAAGGTTTTGCACAAGGAACTCAAAGTCATTTAAATTTTTTGCCAGAACCTCAAACTGATTTTAT
TTTTGCTTGTCTAGGAGAAGAATTTGGGTTTATTGGTGGGTTTCTGCTATTAACTTTATATTTTATAATAATTTGCTATT
CTTTAGTAATTGCAATTAATGTAAGAAATACTTTTAGCAAATTAATTGCAATTGGAATTGCTTCTATGCTGTTCTGGCAT
GTTTTTATTAATATTGCTATGGTAACAGGGCTACTACCTGTTGTAGGAATTCCTTTGCCGTTAATATCTTATGGAGGTAC
GATAATTGCTTCTACACTTCTTGGGATTGGACTAGTTATGAATAGTTATGTAAATAAAGACTTTGACATAGTTAAATCGC
ATTATTGA

Upstream 100 bases:

>100_bases
GATCTAAAATAAAATCTAGCATTGAAACTAAGAATAGTAATGAGAAAAATTTATTATTAAGGTATGCTTAAACTAATAAT
CCATAAGTGAAATATTCAAA

Downstream 100 bases:

>100_bases
TCATAAAAATTATGCTTTATCAGTCGTTAATTTTTTATGTTATAATTCTACTTTCTGGTATATTTAATTTTATTTTATTT
AATTTAAGAATCGATAGTGC

Product: rod shape-determining protein rodA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MQIYQNRSLVKDKLKMLPFTLILTICIVCIFGLITLYSATGCKFFLRAHKQILYYITFLPIGILLALVDVRYIYKYSYIL
YFIVCVVLVMVEIAGYKVMGARRWIGISALRIQPSEVAKISVILMLARYFHDISVYKLKKIQYSIVPLLLIAIPITLVIK
QPDLGTGIIILLITASMFFAAGITLWIFIITFIAGIILLPIIWNLLHNYQKKRIKVFLNPELDPLGSGYNIIQSKVAIGS
GGLSGKGFAQGTQSHLNFLPEPQTDFIFACLGEEFGFIGGFLLLTLYFIIICYSLVIAINVRNTFSKLIAIGIASMLFWH
VFINIAMVTGLLPVVGIPLPLISYGGTIIASTLLGIGLVMNSYVNKDFDIVKSHY

Sequences:

>Translated_375_residues
MQIYQNRSLVKDKLKMLPFTLILTICIVCIFGLITLYSATGCKFFLRAHKQILYYITFLPIGILLALVDVRYIYKYSYIL
YFIVCVVLVMVEIAGYKVMGARRWIGISALRIQPSEVAKISVILMLARYFHDISVYKLKKIQYSIVPLLLIAIPITLVIK
QPDLGTGIIILLITASMFFAAGITLWIFIITFIAGIILLPIIWNLLHNYQKKRIKVFLNPELDPLGSGYNIIQSKVAIGS
GGLSGKGFAQGTQSHLNFLPEPQTDFIFACLGEEFGFIGGFLLLTLYFIIICYSLVIAINVRNTFSKLIAIGIASMLFWH
VFINIAMVTGLLPVVGIPLPLISYGGTIIASTLLGIGLVMNSYVNKDFDIVKSHY
>Mature_375_residues
MQIYQNRSLVKDKLKMLPFTLILTICIVCIFGLITLYSATGCKFFLRAHKQILYYITFLPIGILLALVDVRYIYKYSYIL
YFIVCVVLVMVEIAGYKVMGARRWIGISALRIQPSEVAKISVILMLARYFHDISVYKLKKIQYSIVPLLLIAIPITLVIK
QPDLGTGIIILLITASMFFAAGITLWIFIITFIAGIILLPIIWNLLHNYQKKRIKVFLNPELDPLGSGYNIIQSKVAIGS
GGLSGKGFAQGTQSHLNFLPEPQTDFIFACLGEEFGFIGGFLLLTLYFIIICYSLVIAINVRNTFSKLIAIGIASMLFWH
VFINIAMVTGLLPVVGIPLPLISYGGTIIASTLLGIGLVMNSYVNKDFDIVKSHY

Specific function: This is one of the proteins responsible for the rod shape of the cell. It is required for the expression of the enzymatic activity of PBP2, which is thought to synthesize peptidoglycan in the step of initiation of cell elongation [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=363, Percent_Identity=40.495867768595, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1786277, Length=353, Percent_Identity=32.8611898016997, Blast_Score=173, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 41930; Mature: 41930

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIYQNRSLVKDKLKMLPFTLILTICIVCIFGLITLYSATGCKFFLRAHKQILYYITFLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IGILLALVDVRYIYKYSYILYFIVCVVLVMVEIAGYKVMGARRWIGISALRIQPSEVAKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHCCEEEEEECHHHHHHH
SVILMLARYFHDISVYKLKKIQYSIVPLLLIAIPITLVIKQPDLGTGIIILLITASMFFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHH
AGITLWIFIITFIAGIILLPIIWNLLHNYQKKRIKVFLNPELDPLGSGYNIIQSKVAIGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHCCC
GGLSGKGFAQGTQSHLNFLPEPQTDFIFACLGEEFGFIGGFLLLTLYFIIICYSLVIAIN
CCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRNTFSKLIAIGIASMLFWHVFINIAMVTGLLPVVGIPLPLISYGGTIIASTLLGIGLVM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHH
NSYVNKDFDIVKSHY
HHHHCCCHHHHHCCC
>Mature Secondary Structure
MQIYQNRSLVKDKLKMLPFTLILTICIVCIFGLITLYSATGCKFFLRAHKQILYYITFLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IGILLALVDVRYIYKYSYILYFIVCVVLVMVEIAGYKVMGARRWIGISALRIQPSEVAKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHCCEEEEEECHHHHHHH
SVILMLARYFHDISVYKLKKIQYSIVPLLLIAIPITLVIKQPDLGTGIIILLITASMFFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHH
AGITLWIFIITFIAGIILLPIIWNLLHNYQKKRIKVFLNPELDPLGSGYNIIQSKVAIGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHCCC
GGLSGKGFAQGTQSHLNFLPEPQTDFIFACLGEEFGFIGGFLLLTLYFIIICYSLVIAIN
CCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRNTFSKLIAIGIASMLFWHVFINIAMVTGLLPVVGIPLPLISYGGTIIASTLLGIGLVM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHH
NSYVNKDFDIVKSHY
HHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]