| Definition | Orientia tsutsugamushi Boryong, complete genome. |
|---|---|
| Accession | NC_009488 |
| Length | 2,127,051 |
Click here to switch to the map view.
The map label for this gene is rhp4
Identifier: 148284948
GI number: 148284948
Start: 1692837
End: 1693385
Strand: Direct
Name: rhp4
Synonym: OTBS_1743
Alternate gene names: NA
Gene position: 1692837-1693385 (Clockwise)
Preceding gene: 148284947
Following gene: 148284952
Centisome position: 79.59
GC content: 27.5
Gene sequence:
>549_bases ATGTATAGTACTAATTTTTATCAAGCTGAATCTAGTAGCGAAAGTTCGATAAATATAGCGCAGCTAGCTACAACTTTTAC ATTAAAAAAAGAAGGCAATAATACTTTAATCTTGATTGGATGGAGTAATATTGAATATGCCAATATTATTCAACAAGTAA AATTGAATTGTAATAGAGAAAAAGAATCAGTTAGTTATCGTTATGTAGATAGTGATAGTAGTTATATAGCAATAGAATAT CATGAGTACGCTGTACAAACATGCAATACATTATACGCAGTAGAAAACTTTAATTATGACCAACTTATGTCTGTAGTATT AAAGTATGATCATGAACCTCTTAATTATCAAAGACAAAAGTCATTAGATAATAAGGATTTAACCATTGCATGTAATGATT TGAGTGAAAATCTACTAGAGCAATTAGATATATTCACTGATGACAATAGACTTGCCTATTATAGTGATAATATTCGTGTT CATAATTATGATCAATTTAAAGATTTTATAGGTGGTATATTATTAAGTGATGTTCCAGAAGAAAGATAA
Upstream 100 bases:
>100_bases TCCTGAATTGAAAATATTTAAGCAACAAAAAAGTTATTGCTAATTAGCTAGTATAATTTATAAACTTATAATATAAACTT ACTTAACAATAGGGTGATTT
Downstream 100 bases:
>100_bases TACATGCAAATACTACATGTATCTAATCTAGCATTAATAAGCATAAAGAGACACTCAAAGTTAAAGAAGGACGGGCATTA CTATGCAGTAGTGCTGCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MYSTNFYQAESSSESSINIAQLATTFTLKKEGNNTLILIGWSNIEYANIIQQVKLNCNREKESVSYRYVDSDSSYIAIEY HEYAVQTCNTLYAVENFNYDQLMSVVLKYDHEPLNYQRQKSLDNKDLTIACNDLSENLLEQLDIFTDDNRLAYYSDNIRV HNYDQFKDFIGGILLSDVPEER
Sequences:
>Translated_182_residues MYSTNFYQAESSSESSINIAQLATTFTLKKEGNNTLILIGWSNIEYANIIQQVKLNCNREKESVSYRYVDSDSSYIAIEY HEYAVQTCNTLYAVENFNYDQLMSVVLKYDHEPLNYQRQKSLDNKDLTIACNDLSENLLEQLDIFTDDNRLAYYSDNIRV HNYDQFKDFIGGILLSDVPEER >Mature_182_residues MYSTNFYQAESSSESSINIAQLATTFTLKKEGNNTLILIGWSNIEYANIIQQVKLNCNREKESVSYRYVDSDSSYIAIEY HEYAVQTCNTLYAVENFNYDQLMSVVLKYDHEPLNYQRQKSLDNKDLTIACNDLSENLLEQLDIFTDDNRLAYYSDNIRV HNYDQFKDFIGGILLSDVPEER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21201; Mature: 21201
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYSTNFYQAESSSESSINIAQLATTFTLKKEGNNTLILIGWSNIEYANIIQQVKLNCNRE CCCCCEEECCCCCCCCEEHHHHEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCC KESVSYRYVDSDSSYIAIEYHEYAVQTCNTLYAVENFNYDQLMSVVLKYDHEPLNYQRQK CCCEEEEEEECCCCEEEEEEHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCCCCCHHHH SLDNKDLTIACNDLSENLLEQLDIFTDDNRLAYYSDNIRVHNYDQFKDFIGGILLSDVPE CCCCCCEEEEECHHHHHHHHHHCCEECCCEEEEEECCEEEECHHHHHHHHHHHHHCCCCC ER CC >Mature Secondary Structure MYSTNFYQAESSSESSINIAQLATTFTLKKEGNNTLILIGWSNIEYANIIQQVKLNCNRE CCCCCEEECCCCCCCCEEHHHHEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCC KESVSYRYVDSDSSYIAIEYHEYAVQTCNTLYAVENFNYDQLMSVVLKYDHEPLNYQRQK CCCEEEEEEECCCCEEEEEEHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCCCCCHHHH SLDNKDLTIACNDLSENLLEQLDIFTDDNRLAYYSDNIRVHNYDQFKDFIGGILLSDVPE CCCCCCEEEEECHHHHHHHHHHCCEECCCEEEEEECCEEEECHHHHHHHHHHHHHCCCCC ER CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA