Definition Orientia tsutsugamushi Boryong, complete genome.
Accession NC_009488
Length 2,127,051

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The map label for this gene is 148284911

Identifier: 148284911

GI number: 148284911

Start: 1635074

End: 1636264

Strand: Direct

Name: 148284911

Synonym: OTBS_1683

Alternate gene names: NA

Gene position: 1635074-1636264 (Clockwise)

Preceding gene: 148284910

Following gene: 148284912

Centisome position: 76.87

GC content: 30.9

Gene sequence:

>1191_bases
ATGATTAAAGGTTATTTACATAAAATTCTTGATAAAGTTAATATTCTTTCTAATAAAAACACCTGCTACAAAAATTTTCA
GCCTTTGGACTTACAATATGTCGCTAGTAGCAATTATACTACAGGAGCTACAGTTAGCGCTTATTTTCAAAATGTTATTG
TGTATCGGTGTGTTAATTTGATAGCTAACTCTGCAAGTCATGTGCCATGGTATATAAAAAAAAAGAAACAGCTTACATAT
GAAAGACTTTTACATCATCCTATACTTGATTTACTACAACGCCCAAATTATAGCGTATCTGGTGCAGATTTTTTTTCTGA
GTTGATTATTAATAAACTACTTACAGGTAATGCTTTTATATTGGCTACAGGTATAAAGGATATGTTACCTAAAGAACTAT
ATTTACTCAATATTAATGATGTAGAAGTACAAGAACAAGCTGGGCAAGTGATAGGATATCGCTATCCTAGTAATAGTAAC
AACTTTTATCGAATTAGCAATACACATGATAAGTGTCCGATATTACATATGAAAAATTATAATCCATTGAGTAAGAAGTA
TGGTATGTCTTGTTTAGATCCAGCCTCTATGCCAATAACTTTATATAATCAGGTTGTGCAATGGAATTATGCTTTATTAA
AAAATGGAGCTCGTCCCAGTGGAGCTCTGATATTAAAGGATAGTAATTCTTATTTAAGTGAAGAGCAATTTGAAAGATTA
AGAGATCAATTATTACAAAAATATACTAGTTCATCAAATTCTGGTGCACCTCTGTTATTAGAGGGAGGACTTGATTGGAA
AGAAATGAGTATTAATCCAAAAGATATGGATTTTATGGAATCTAAGAATTCTGCTGCTAGAGAAATTGCATTAGCATTTG
GTGTACCTCCGCAATTATTAGGAATTAATGGTGATAATACATATAGCAATATGCAGGAGGCTAGATTAGCATTATGGGAA
GAAACACTGATTCCATTACTTGACCGTATTGCTGATTCGTTAACTATGTGGTTCTCAAAATTATTTAAAGAAAATATTAT
TATTGATTTTGATAGAGACTGTATATCAGCTTTAACAGAAAAACGAGAAAATTTATGGTCTAAAATTTCTACAGCTAATT
TTATGACAATTAATGAGAAGAGACGCATAATATCTCTTCCTCCGATAGATGGAGGAGATAAATTAATATGA

Upstream 100 bases:

>100_bases
TTGGGTTAAACGATAAATGATATCAAAATAAATTTAGTAAATAACTTCTTAGTCTATTGTTAAACACTGTTATTCTATAA
TTATTTAAGTAGTGGTAGCA

Downstream 100 bases:

>100_bases
GTTTTGTACATAGAGACTATGAATGAGCAATTAATTAAACTATCGCAGCTTAGCATTTACTTAGTTAATATTTTAGACAA
GGAGTTGATTAACCTGCAAA

Product: HK97 family phage portal protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MIKGYLHKILDKVNILSNKNTCYKNFQPLDLQYVASSNYTTGATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY
ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN
NFYRISNTHDKCPILHMKNYNPLSKKYGMSCLDPASMPITLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL
RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE
ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI

Sequences:

>Translated_396_residues
MIKGYLHKILDKVNILSNKNTCYKNFQPLDLQYVASSNYTTGATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY
ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN
NFYRISNTHDKCPILHMKNYNPLSKKYGMSCLDPASMPITLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL
RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE
ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI
>Mature_396_residues
MIKGYLHKILDKVNILSNKNTCYKNFQPLDLQYVASSNYTTGATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY
ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN
NFYRISNTHDKCPILHMKNYNPLSKKYGMSCLDPASMPITLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL
RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE
ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. HK97 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006427 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 45151; Mature: 45151

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKGYLHKILDKVNILSNKNTCYKNFQPLDLQYVASSNYTTGATVSAYFQNVIVYRCVNL
CCHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
IANSASHVPWYIKKKKQLTYERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFI
HHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
LATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSNNFYRISNTHDKCPILHMKNY
EECCHHHHCCCCEEEEECCCCHHHHHCCCEEEEECCCCCCCEEEECCCCCCCCEEEECCC
NPLSKKYGMSCLDPASMPITLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL
CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH
RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLL
HHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHEE
GINGDNTYSNMQEARLALWEETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTE
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHH
KRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI
HHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MIKGYLHKILDKVNILSNKNTCYKNFQPLDLQYVASSNYTTGATVSAYFQNVIVYRCVNL
CCHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
IANSASHVPWYIKKKKQLTYERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFI
HHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
LATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSNNFYRISNTHDKCPILHMKNY
EECCHHHHCCCCEEEEECCCCHHHHHCCCEEEEECCCCCCCEEEECCCCCCCCEEEECCC
NPLSKKYGMSCLDPASMPITLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL
CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH
RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLL
HHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHEE
GINGDNTYSNMQEARLALWEETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTE
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHH
KRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI
HHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA