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The map label for this gene is sodB [H]

Identifier: 148284801

GI number: 148284801

Start: 1449292

End: 1449933

Strand: Direct

Name: sodB [H]

Synonym: OTBS_1489

Alternate gene names: 148284801

Gene position: 1449292-1449933 (Clockwise)

Preceding gene: 148284788

Following gene: 148284802

Centisome position: 68.14

GC content: 28.82

Gene sequence:

>642_bases
ATGACTTTTTCTAAAACTGCTAATCAAACAAGTTATCCGTTTAAATTAATGGAGTTGCCATATTCTAAAAATTCAATGGA
GCAATATATATCAAGTGAAGCATTTGATTACCATCATGGTAAGCACCATGCTGCTTATGTTAATAACTTAAATCGATTGC
TTGAACATAAAGCTGAATTACAGCAAAAATCGTTAGAAGATATTATCTTAACTTCATTTAATTCCGAAGGAAGCAAAGCT
ATATTTAATAATGCAGCACAAATTTGGAATCATAATTTTTTTTGGCATTCGATATGCAATAATAATGCAACTAAACCTGA
AGGAAATTTTTTACAAAAAATCAATCAGGATTTTGGTAGCTATGAAAATTTTACTAATCAATTTCAAGAGCTAGCACTTG
CGCAATTTGGTAGTGGTTGGGTCTGGTTGATATCTGAAAATTGTAAGCTAAAAATTATAACCACATCTAATGCTGAATTG
CCAATAATTTATAATCAAATACCGTTATTAACTTGTGATGTATGGGAACATTCTTATTATATTGATTATCGTAATAATAG
GGCAAAATATTTACAACAGTTTATAGAGCATTTAGCAAATTGGCAATTTGCTGAACAAAATTTTTTGAATTCTATTAAGT
GA

Upstream 100 bases:

>100_bases
GATACTTAATTTATAACAATTTATTGATATATTGATAGCAATAAGATGATATAATAATATTAATTATATCACATAAATAA
TATATGGAGTATTGTGTAAT

Downstream 100 bases:

>100_bases
GCAAAGTAAAAATAAATTAAGTAGATTAAAAGAGGGCTATGTGAGCAGCTGTAATTCTGTAAATCAAAGTTTTTTATTTA
GACAAAATGCTGAGTATATT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTFSKTANQTSYPFKLMELPYSKNSMEQYISSEAFDYHHGKHHAAYVNNLNRLLEHKAELQQKSLEDIILTSFNSEGSKA
IFNNAAQIWNHNFFWHSICNNNATKPEGNFLQKINQDFGSYENFTNQFQELALAQFGSGWVWLISENCKLKIITTSNAEL
PIIYNQIPLLTCDVWEHSYYIDYRNNRAKYLQQFIEHLANWQFAEQNFLNSIK

Sequences:

>Translated_213_residues
MTFSKTANQTSYPFKLMELPYSKNSMEQYISSEAFDYHHGKHHAAYVNNLNRLLEHKAELQQKSLEDIILTSFNSEGSKA
IFNNAAQIWNHNFFWHSICNNNATKPEGNFLQKINQDFGSYENFTNQFQELALAQFGSGWVWLISENCKLKIITTSNAEL
PIIYNQIPLLTCDVWEHSYYIDYRNNRAKYLQQFIEHLANWQFAEQNFLNSIK
>Mature_212_residues
TFSKTANQTSYPFKLMELPYSKNSMEQYISSEAFDYHHGKHHAAYVNNLNRLLEHKAELQQKSLEDIILTSFNSEGSKAI
FNNAAQIWNHNFFWHSICNNNATKPEGNFLQKINQDFGSYENFTNQFQELALAQFGSGWVWLISENCKLKIITTSNAELP
IIYNQIPLLTCDVWEHSYYIDYRNNRAKYLQQFIEHLANWQFAEQNFLNSIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=35.3233830845771, Blast_Score=121, Evalue=3e-28,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=35.3233830845771, Blast_Score=121, Evalue=3e-28,
Organism=Homo sapiens, GI67782309, Length=201, Percent_Identity=30.3482587064677, Blast_Score=90, Evalue=2e-18,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=47.4489795918367, Blast_Score=193, Evalue=7e-51,
Organism=Escherichia coli, GI1790342, Length=203, Percent_Identity=33.4975369458128, Blast_Score=138, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=35, Blast_Score=114, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=36.3636363636364, Blast_Score=113, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6321796, Length=219, Percent_Identity=27.8538812785388, Blast_Score=87, Evalue=1e-18,
Organism=Drosophila melanogaster, GI17136812, Length=189, Percent_Identity=35.4497354497354, Blast_Score=103, Evalue=1e-22,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 25039; Mature: 24908

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFSKTANQTSYPFKLMELPYSKNSMEQYISSEAFDYHHGKHHAAYVNNLNRLLEHKAEL
CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
QQKSLEDIILTSFNSEGSKAIFNNAAQIWNHNFFWHSICNNNATKPEGNFLQKINQDFGS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCC
YENFTNQFQELALAQFGSGWVWLISENCKLKIITTSNAELPIIYNQIPLLTCDVWEHSYY
HHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCEEECCCCEEEEEECCCEEE
IDYRNNRAKYLQQFIEHLANWQFAEQNFLNSIK
EEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure 
TFSKTANQTSYPFKLMELPYSKNSMEQYISSEAFDYHHGKHHAAYVNNLNRLLEHKAEL
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
QQKSLEDIILTSFNSEGSKAIFNNAAQIWNHNFFWHSICNNNATKPEGNFLQKINQDFGS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCC
YENFTNQFQELALAQFGSGWVWLISENCKLKIITTSNAELPIIYNQIPLLTCDVWEHSYY
HHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCEEECCCCEEEEEECCCEEE
IDYRNNRAKYLQQFIEHLANWQFAEQNFLNSIK
EEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA