| Definition | Orientia tsutsugamushi Boryong, complete genome. |
|---|---|
| Accession | NC_009488 |
| Length | 2,127,051 |
Click here to switch to the map view.
The map label for this gene is 148284385
Identifier: 148284385
GI number: 148284385
Start: 649915
End: 651516
Strand: Direct
Name: 148284385
Synonym: OTBS_0671
Alternate gene names: NA
Gene position: 649915-651516 (Clockwise)
Preceding gene: 148284382
Following gene: 148284408
Centisome position: 30.55
GC content: 26.28
Gene sequence:
>1602_bases ATGTTTACTAAACAAATATCGCAAGAAAGATACTTCAAAAAATTAATTACTAGGCAAGATACGAAAGTAGAATCACAAGA AAATTTGCAAACTGCAACATTATTATCAAAAATGGATGTATGCATAGAAAAAGTTGATCAAGAATTATTTAGGGCAGAGC AAATAATAAAAAAGCAAGATATAAGGTTGCAAAAACTAAAATTAATACACAAGACATTAGATAATCTTGAGCATAATTAC AAACAAAAAATTCTTCAATCTCATGGAATGCAAGGTTTAGATAGTAATAAGAAAGATCTATTGATGATAGATGATTCTAA ATTACTAAATAATCATGTTAAAGATGAGTTAAGTAAATTAATTAATATGAAAGGAAAAAAAATAGAATGGCAGGAAAATT GGCAAACATTATTATCAAAAATGGATGCTTGCACAGAAAAAATTGATCAAGAATTATCTAATGCAGAGCAAATAATAAAA GAGCAAGGTATAAGATTACACCAACTAAAATCAATACACAAGACATTAGATAATCTTGAGCATAATTACAAACAAAAAAT ATACCTAAAAGATGCTAATGCTTTTATTTCTGAACAGAAAGAAAATTATTTTGTACATTTAATATTAAAAAAATTAGAAA CACATAGATCAACTCTTGATACTGCTTTACAGATTTTGACAAGCAACAAACTAAGCACAGAAAATCAAGATATAAAAATT AGAGATTTACTTGATACTACATATAAAGCAGAAAATGTAAATAACCTAGAGATAATAATTTGTGATACATTTAATATTAT ACATAAGGTAAAAAAGTTAATAGACAACACTAGTAAAACCAAAGATGGTGATGCTATTTTAGCACAACATGTACTTGAGA TATTTGAGAAAATTGTTGCTAATCTGCAAAGTAATCAAATTATTTTAGATTATGCGAAACAAAATCTAGGAAAGAGTTAT TTAAAGTTATTTTCTGAAGATAAACAAGTAGATTTAAATTGTAGTTTAGAAAGCACAAAAGCTCAAAATACAGAAGATGT TCCTATCTTAAATAGTAAAACTGAAAAACTTGTTAATAAAAATGAAGAGATAGCAGATAATGAAATAATACATAAAAATT CCTCAGCATATCTGCAAATATATAATTCAGACTTGAAAGAGATAAAAAGTATAATGCGTGATATAAAAGAGATAGCAGAA ACAGAATATTCAAATGATGAGTGTAATAATGCTATTAAAAGAGCAGCAATAGAACAAATTGATACTTGCATTAGTAAATG TGATACTATTTGCAATACTGAAAAAGAAAATCAAAATTCTGATAGCGAAATTACGCTCGAAGAGTGGAAACAAATGACCG AATGTACAAAAGAGAATAGCAAAAAAACAGAGCAAAATAATCTTAATGAACACACAACTTTCTTTGATAAAGCTAAAGAA GCAGTTGTAACAGTCGCTTCTTCGTTTTTTAAACTATTTTTACCTATAGAAGTAAACAATAAAAATTCTGTTCATGAAAC ACAAGATCTAGATATTTCAAGTAGTTTTGAATTATTAGATATAAATGAAAACGATACAGAAGCTATAGGAGAAGTTCTAT AG
Upstream 100 bases:
>100_bases GTACTCATTAATTAAGTATTGTAAAACGATTTATTTTGTGCTTAATTGATAGAAAGTATATTTTTATTAATTAAACTGAA ATAATTTTTAAGTAAAAAAC
Downstream 100 bases:
>100_bases CTTCGTCTGTTTATAAATTATAATAGTTTGGCTATCATTATGACCTAGCTATGCTTTTTGAAAAGTATATAATATAACTG TGTTATAGTAGCTTAGCTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 533; Mature: 533
Protein sequence:
>533_residues MFTKQISQERYFKKLITRQDTKVESQENLQTATLLSKMDVCIEKVDQELFRAEQIIKKQDIRLQKLKLIHKTLDNLEHNY KQKILQSHGMQGLDSNKKDLLMIDDSKLLNNHVKDELSKLINMKGKKIEWQENWQTLLSKMDACTEKIDQELSNAEQIIK EQGIRLHQLKSIHKTLDNLEHNYKQKIYLKDANAFISEQKENYFVHLILKKLETHRSTLDTALQILTSNKLSTENQDIKI RDLLDTTYKAENVNNLEIIICDTFNIIHKVKKLIDNTSKTKDGDAILAQHVLEIFEKIVANLQSNQIILDYAKQNLGKSY LKLFSEDKQVDLNCSLESTKAQNTEDVPILNSKTEKLVNKNEEIADNEIIHKNSSAYLQIYNSDLKEIKSIMRDIKEIAE TEYSNDECNNAIKRAAIEQIDTCISKCDTICNTEKENQNSDSEITLEEWKQMTECTKENSKKTEQNNLNEHTTFFDKAKE AVVTVASSFFKLFLPIEVNNKNSVHETQDLDISSSFELLDINENDTEAIGEVL
Sequences:
>Translated_533_residues MFTKQISQERYFKKLITRQDTKVESQENLQTATLLSKMDVCIEKVDQELFRAEQIIKKQDIRLQKLKLIHKTLDNLEHNY KQKILQSHGMQGLDSNKKDLLMIDDSKLLNNHVKDELSKLINMKGKKIEWQENWQTLLSKMDACTEKIDQELSNAEQIIK EQGIRLHQLKSIHKTLDNLEHNYKQKIYLKDANAFISEQKENYFVHLILKKLETHRSTLDTALQILTSNKLSTENQDIKI RDLLDTTYKAENVNNLEIIICDTFNIIHKVKKLIDNTSKTKDGDAILAQHVLEIFEKIVANLQSNQIILDYAKQNLGKSY LKLFSEDKQVDLNCSLESTKAQNTEDVPILNSKTEKLVNKNEEIADNEIIHKNSSAYLQIYNSDLKEIKSIMRDIKEIAE TEYSNDECNNAIKRAAIEQIDTCISKCDTICNTEKENQNSDSEITLEEWKQMTECTKENSKKTEQNNLNEHTTFFDKAKE AVVTVASSFFKLFLPIEVNNKNSVHETQDLDISSSFELLDINENDTEAIGEVL >Mature_533_residues MFTKQISQERYFKKLITRQDTKVESQENLQTATLLSKMDVCIEKVDQELFRAEQIIKKQDIRLQKLKLIHKTLDNLEHNY KQKILQSHGMQGLDSNKKDLLMIDDSKLLNNHVKDELSKLINMKGKKIEWQENWQTLLSKMDACTEKIDQELSNAEQIIK EQGIRLHQLKSIHKTLDNLEHNYKQKIYLKDANAFISEQKENYFVHLILKKLETHRSTLDTALQILTSNKLSTENQDIKI RDLLDTTYKAENVNNLEIIICDTFNIIHKVKKLIDNTSKTKDGDAILAQHVLEIFEKIVANLQSNQIILDYAKQNLGKSY LKLFSEDKQVDLNCSLESTKAQNTEDVPILNSKTEKLVNKNEEIADNEIIHKNSSAYLQIYNSDLKEIKSIMRDIKEIAE TEYSNDECNNAIKRAAIEQIDTCISKCDTICNTEKENQNSDSEITLEEWKQMTECTKENSKKTEQNNLNEHTTFFDKAKE AVVTVASSFFKLFLPIEVNNKNSVHETQDLDISSSFELLDINENDTEAIGEVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61766; Mature: 61766
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTKQISQERYFKKLITRQDTKVESQENLQTATLLSKMDVCIEKVDQELFRAEQIIKKQD CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC IRLQKLKLIHKTLDNLEHNYKQKILQSHGMQGLDSNKKDLLMIDDSKLLNNHVKDELSKL CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHH INMKGKKIEWQENWQTLLSKMDACTEKIDQELSNAEQIIKEQGIRLHQLKSIHKTLDNLE HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH HNYKQKIYLKDANAFISEQKENYFVHLILKKLETHRSTLDTALQILTSNKLSTENQDIKI HHHHHEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEH RDLLDTTYKAENVNNLEIIICDTFNIIHKVKKLIDNTSKTKDGDAILAQHVLEIFEKIVA HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH NLQSNQIILDYAKQNLGKSYLKLFSEDKQVDLNCSLESTKAQNTEDVPILNSKTEKLVNK CCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCC NEEIADNEIIHKNSSAYLQIYNSDLKEIKSIMRDIKEIAETEYSNDECNNAIKRAAIEQI CCHHCCCHHEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH DTCISKCDTICNTEKENQNSDSEITLEEWKQMTECTKENSKKTEQNNLNEHTTFFDKAKE HHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHH AVVTVASSFFKLFLPIEVNNKNSVHETQDLDISSSFELLDINENDTEAIGEVL HHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHCC >Mature Secondary Structure MFTKQISQERYFKKLITRQDTKVESQENLQTATLLSKMDVCIEKVDQELFRAEQIIKKQD CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC IRLQKLKLIHKTLDNLEHNYKQKILQSHGMQGLDSNKKDLLMIDDSKLLNNHVKDELSKL CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHH INMKGKKIEWQENWQTLLSKMDACTEKIDQELSNAEQIIKEQGIRLHQLKSIHKTLDNLE HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH HNYKQKIYLKDANAFISEQKENYFVHLILKKLETHRSTLDTALQILTSNKLSTENQDIKI HHHHHEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEH RDLLDTTYKAENVNNLEIIICDTFNIIHKVKKLIDNTSKTKDGDAILAQHVLEIFEKIVA HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH NLQSNQIILDYAKQNLGKSYLKLFSEDKQVDLNCSLESTKAQNTEDVPILNSKTEKLVNK CCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCC NEEIADNEIIHKNSSAYLQIYNSDLKEIKSIMRDIKEIAETEYSNDECNNAIKRAAIEQI CCHHCCCHHEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH DTCISKCDTICNTEKENQNSDSEITLEEWKQMTECTKENSKKTEQNNLNEHTTFFDKAKE HHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHH AVVTVASSFFKLFLPIEVNNKNSVHETQDLDISSSFELLDINENDTEAIGEVL HHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA