Click here to switch to the map view.

The map label for this gene is traD_Ti

Identifier: 148284305

GI number: 148284305

Start: 495996

End: 496394

Strand: Direct

Name: traD_Ti

Synonym: OTBS_0519

Alternate gene names: NA

Gene position: 495996-496394 (Clockwise)

Preceding gene: 148284302

Following gene: 148284306

Centisome position: 23.32

GC content: 36.59

Gene sequence:

>399_bases
ATGGATGAGGTTAACCTCAAAATCAAAGAACGTAAAATGCGTACTCGACGTCTTATCGAAATGGGTGGACTAGTCGCTAA
GGCTAAGCTTGATCACTTACAGACAAACACTTTATTTGGTGCAATTGTTTCACTAAAAGAAACTTTAACACAACATCCAA
ATGTTCAGAATCATTGGACTACAATCGGTAAAAATATTTTTGATAAGGAACAGCAAAATAAAGCTGCTGTGATTTTAAAA
TTTTCCTCTGAACCAGATGAAAACACTAAGCGCTACATTCGCCTTCATGGCTTAAAATGGAATAGCTTTCGTCAAGAATG
GTGCAGCAATGTTAAGGACATTGAGGCCTTAAAGAATGGCCTTCTTAATGTTCAGTATAAACTTGAGCTTGTGTCTTAG

Upstream 100 bases:

>100_bases
TGATATATTCTTGCCTGATTTTTTTATCTTTCTGAATTACTAACATGGCAAATCTTATGCAGCAAAAAATTACTCTCCAA
CAAAAAAAGCTAAGCTAATC

Downstream 100 bases:

>100_bases
TTTTTTAATACTTATACAACAAACACAGCTTGATAATTCAGCTAATGTAATTTATAAATCATGAGTGTAATGCAATTTTA
AATATATATGGTGGTTATGC

Product: conjugative transfer protein

Products: NA

Alternate protein names: Conjugal Transfer Protein TraD; Conjugative Transfer Protein

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MDEVNLKIKERKMRTRRLIEMGGLVAKAKLDHLQTNTLFGAIVSLKETLTQHPNVQNHWTTIGKNIFDKEQQNKAAVILK
FSSEPDENTKRYIRLHGLKWNSFRQEWCSNVKDIEALKNGLLNVQYKLELVS

Sequences:

>Translated_132_residues
MDEVNLKIKERKMRTRRLIEMGGLVAKAKLDHLQTNTLFGAIVSLKETLTQHPNVQNHWTTIGKNIFDKEQQNKAAVILK
FSSEPDENTKRYIRLHGLKWNSFRQEWCSNVKDIEALKNGLLNVQYKLELVS
>Mature_132_residues
MDEVNLKIKERKMRTRRLIEMGGLVAKAKLDHLQTNTLFGAIVSLKETLTQHPNVQNHWTTIGKNIFDKEQQNKAAVILK
FSSEPDENTKRYIRLHGLKWNSFRQEWCSNVKDIEALKNGLLNVQYKLELVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15375; Mature: 15375

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEVNLKIKERKMRTRRLIEMGGLVAKAKLDHLQTNTLFGAIVSLKETLTQHPNVQNHWT
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
TIGKNIFDKEQQNKAAVILKFSSEPDENTKRYIRLHGLKWNSFRQEWCSNVKDIEALKNG
HHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHCC
LLNVQYKLELVS
CEEEEEEEEEEC
>Mature Secondary Structure
MDEVNLKIKERKMRTRRLIEMGGLVAKAKLDHLQTNTLFGAIVSLKETLTQHPNVQNHWT
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
TIGKNIFDKEQQNKAAVILKFSSEPDENTKRYIRLHGLKWNSFRQEWCSNVKDIEALKNG
HHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHCC
LLNVQYKLELVS
CEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA