Click here to switch to the map view.

The map label for this gene is radA [H]

Identifier: 148284240

GI number: 148284240

Start: 385396

End: 386751

Strand: Direct

Name: radA [H]

Synonym: OTBS_0406

Alternate gene names: 148284240

Gene position: 385396-386751 (Clockwise)

Preceding gene: 148284239

Following gene: 148284242

Centisome position: 18.12

GC content: 33.78

Gene sequence:

>1356_bases
ATGAAAACAAAGAAACAATATACTTGCACTAATTGTGGTAGTATAAGCTATAAGTGGTATGGCAGATGCTCTGAATGTAA
TGAGTGGAATAGTATTATAGAAGATGTTATATCTAATAACTCTTACAATAGTAGCGCAAGTGTGACTGGCAATAATTTAA
CTATTAGTGCTCTTGATAAAGATATTGATGAGCCACGTAGAATTATTAGTTCAATTAATGAGTTAAATAGAGTACTTGGC
GGAGGATTAATTCCAGAATCAGCAATTCTTATAGGTGGTGATCCAGGCATTGGCAAATCGACCTTATTACTTCAGTTATG
TGCTCAATTATCCACTTCATCTACTTCTTGTTTTTATATTTCTGGCGAAGAATCAGTTAATCAGATCAAGCTTAGAGCTC
AAAGACTAGGTTTGGTAAACACGCAAATTAAACTTGTTTCTGCTACTAATATTCATGATATCATAGCTACCATTAAAGCA
AATAGGCAAGAAATCCATCTAGTTGTTATTGATTCTATACAAACAATTTATAATCCTGAAATTACATCCATAGCTGGCAC
AACATCGCAAGTTCGGGCAGCAGCACAAATGTTAATATCTTTAACTAAATTAATTGGTATAGCACTAATTATGGTAGGTC
ATATCACTAAAGATGGACAGCTAGCTGGGCCTAAAATTCTTGAGCATATGGTCGACACTGTTTTGTATCTCGAGGGAAGT
TCAAATTATCAATATAGACTTCTACGAGCGATAAAAAATCGATTTGGCAAAACAAATGAAATAGGTGTTTTCACTATGGA
ACAATCTGGATTAATAGAAGTATCAAATCCATCAGAAATGTTTATACTAAATACTGAAACCAATTATAGCGGCACTAGTG
TTTTTGCAAGTATGGAAGGGTCACGTCCTATTCTAGTAGAGATTCAAGCTTTAATATCGCCTTCTCATATTCCAACTCCA
AGGCGTTCTGTAGTTGGATGGGATAGTAACAGATTATCAATGATACTAGCGGTATTAGCTGTACGATATGGATTAACTCT
TACATCTTATGAAGTATATTTAAGTGTAGCAGGCGGATTAAAAATTACAGAACCGGCTGTTGATTTAGCTGTTGCTGCTT
CCTTGATTTCTGCAGCATCAAACCAACCATTACCACTACACAGTATTTTTTTTGGGGAAATTAGCTTATCTGGAGAAATT
AGAAAATCTACTCAATCAGACCTTAGAGTTAATGAAGCCGTAAAGCTTGGTTTTAAAAATATTTTCTGTGCTGATTATAG
TAATAATTCATCAGCTAATTCAGATTATAACATATATAACCTCAAACATATTAAGCAGCTAAAAGATATCTTATAA

Upstream 100 bases:

>100_bases
AGTTAAACCATAAGTTAGTATTACCAGTCAATTTTTATTTTCAGACAGAAAAAATTTATGGTAAAAGTAAGTTAACAATT
TTACTTTATAAAAATAATTA

Downstream 100 bases:

>100_bases
CCAACTAAAAAAGAAGACTAATCATTATAACAACTATTTTATAAATTTTTAGCGTTAGAATTATTTGGTGCAACGTTAAT
TAAATAAGCAGAGAATATAA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MKTKKQYTCTNCGSISYKWYGRCSECNEWNSIIEDVISNNSYNSSASVTGNNLTISALDKDIDEPRRIISSINELNRVLG
GGLIPESAILIGGDPGIGKSTLLLQLCAQLSTSSTSCFYISGEESVNQIKLRAQRLGLVNTQIKLVSATNIHDIIATIKA
NRQEIHLVVIDSIQTIYNPEITSIAGTTSQVRAAAQMLISLTKLIGIALIMVGHITKDGQLAGPKILEHMVDTVLYLEGS
SNYQYRLLRAIKNRFGKTNEIGVFTMEQSGLIEVSNPSEMFILNTETNYSGTSVFASMEGSRPILVEIQALISPSHIPTP
RRSVVGWDSNRLSMILAVLAVRYGLTLTSYEVYLSVAGGLKITEPAVDLAVAASLISAASNQPLPLHSIFFGEISLSGEI
RKSTQSDLRVNEAVKLGFKNIFCADYSNNSSANSDYNIYNLKHIKQLKDIL

Sequences:

>Translated_451_residues
MKTKKQYTCTNCGSISYKWYGRCSECNEWNSIIEDVISNNSYNSSASVTGNNLTISALDKDIDEPRRIISSINELNRVLG
GGLIPESAILIGGDPGIGKSTLLLQLCAQLSTSSTSCFYISGEESVNQIKLRAQRLGLVNTQIKLVSATNIHDIIATIKA
NRQEIHLVVIDSIQTIYNPEITSIAGTTSQVRAAAQMLISLTKLIGIALIMVGHITKDGQLAGPKILEHMVDTVLYLEGS
SNYQYRLLRAIKNRFGKTNEIGVFTMEQSGLIEVSNPSEMFILNTETNYSGTSVFASMEGSRPILVEIQALISPSHIPTP
RRSVVGWDSNRLSMILAVLAVRYGLTLTSYEVYLSVAGGLKITEPAVDLAVAASLISAASNQPLPLHSIFFGEISLSGEI
RKSTQSDLRVNEAVKLGFKNIFCADYSNNSSANSDYNIYNLKHIKQLKDIL
>Mature_451_residues
MKTKKQYTCTNCGSISYKWYGRCSECNEWNSIIEDVISNNSYNSSASVTGNNLTISALDKDIDEPRRIISSINELNRVLG
GGLIPESAILIGGDPGIGKSTLLLQLCAQLSTSSTSCFYISGEESVNQIKLRAQRLGLVNTQIKLVSATNIHDIIATIKA
NRQEIHLVVIDSIQTIYNPEITSIAGTTSQVRAAAQMLISLTKLIGIALIMVGHITKDGQLAGPKILEHMVDTVLYLEGS
SNYQYRLLRAIKNRFGKTNEIGVFTMEQSGLIEVSNPSEMFILNTETNYSGTSVFASMEGSRPILVEIQALISPSHIPTP
RRSVVGWDSNRLSMILAVLAVRYGLTLTSYEVYLSVAGGLKITEPAVDLAVAASLISAASNQPLPLHSIFFGEISLSGEI
RKSTQSDLRVNEAVKLGFKNIFCADYSNNSSANSDYNIYNLKHIKQLKDIL

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=455, Percent_Identity=40.6593406593407, Blast_Score=364, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 49209; Mature: 49209

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKKQYTCTNCGSISYKWYGRCSECNEWNSIIEDVISNNSYNSSASVTGNNLTISALDK
CCCCCCEEECCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCC
DIDEPRRIISSINELNRVLGGGLIPESAILIGGDPGIGKSTLLLQLCAQLSTSSTSCFYI
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
SGEESVNQIKLRAQRLGLVNTQIKLVSATNIHDIIATIKANRQEIHLVVIDSIQTIYNPE
ECCCCHHHHHHHHHHCCEEECEEEEEECCCHHHHHHHHCCCCEEEEEEEEECHHHHCCCC
ITSIAGTTSQVRAAAQMLISLTKLIGIALIMVGHITKDGQLAGPKILEHMVDTVLYLEGS
HHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEECC
SNYQYRLLRAIKNRFGKTNEIGVFTMEQSGLIEVSNPSEMFILNTETNYSGTSVFASMEG
CCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCCCEEEEECCC
SRPILVEIQALISPSHIPTPRRSVVGWDSNRLSMILAVLAVRYGLTLTSYEVYLSVAGGL
CCCEEEEEEEHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCC
KITEPAVDLAVAASLISAASNQPLPLHSIFFGEISLSGEIRKSTQSDLRVNEAVKLGFKN
EECCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCHHHHCCHHHHHHHHHHHHCCCE
IFCADYSNNSSANSDYNIYNLKHIKQLKDIL
EEEEECCCCCCCCCCCEEEEHHHHHHHHHCC
>Mature Secondary Structure
MKTKKQYTCTNCGSISYKWYGRCSECNEWNSIIEDVISNNSYNSSASVTGNNLTISALDK
CCCCCCEEECCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCC
DIDEPRRIISSINELNRVLGGGLIPESAILIGGDPGIGKSTLLLQLCAQLSTSSTSCFYI
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
SGEESVNQIKLRAQRLGLVNTQIKLVSATNIHDIIATIKANRQEIHLVVIDSIQTIYNPE
ECCCCHHHHHHHHHHCCEEECEEEEEECCCHHHHHHHHCCCCEEEEEEEEECHHHHCCCC
ITSIAGTTSQVRAAAQMLISLTKLIGIALIMVGHITKDGQLAGPKILEHMVDTVLYLEGS
HHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEECC
SNYQYRLLRAIKNRFGKTNEIGVFTMEQSGLIEVSNPSEMFILNTETNYSGTSVFASMEG
CCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCCCEEEEECCC
SRPILVEIQALISPSHIPTPRRSVVGWDSNRLSMILAVLAVRYGLTLTSYEVYLSVAGGL
CCCEEEEEEEHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCC
KITEPAVDLAVAASLISAASNQPLPLHSIFFGEISLSGEIRKSTQSDLRVNEAVKLGFKN
EECCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCHHHHCCHHHHHHHHHHHHCCCE
IFCADYSNNSSANSDYNIYNLKHIKQLKDIL
EEEEECCCCCCCCCCCEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA