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The map label for this gene is capA [H]

Identifier: 148269097

GI number: 148269097

Start: 2860203

End: 2860865

Strand: Reverse

Name: capA [H]

Synonym: SaurJH9_2688

Alternate gene names: 148269097

Gene position: 2860865-2860203 (Counterclockwise)

Preceding gene: 148269098

Following gene: 148269096

Centisome position: 98.42

GC content: 28.96

Gene sequence:

>663_bases
ATGAAAGAAAAGTTTGATTTAGTAAAACTATTAAATATTCTAAAGAAGAATATTAAATTATTGCTTATTTTACCGGCAAT
ATGTCTTGTAGTAAGTACGGCATTAACCTTCTTTGTTATGCCTGACAAATATACTGCTTCTACTCAAATACTAGTGAACA
TGAAAAAGTCCTCAAGTGATTTAGCTTTCCAAAATGTTCAAAGTAGTTTGCAGTCTGTTAATACATATACGGAAATTATC
AAAAGTCCAAGAATTCTAGATAAAGTATCTAGAGAGTTTGATGGTCAGTATTCAACAGCTGAGTTGAATTCGTTTTTAAA
AGTAACCAATCAAACAAACTCTCAGATTATTACTGTATCAGTTACAACTGGGAATAAATCTGAATCTGACAAAATTGTTA
ATAGAATATCTAAAGTTTTTGCACATGATATGCCTAAAATTATGAGTGTTGATAATGTTACGATACTTTCCTCAGCACAT
GATAATGCTGTAAAAGTATCTCCAATAGTATCTGTCAACTTAGTGATCAGCATTATTGTTGGTATTGTTTTAGCAATATT
GATTATTTTCTTAAAAGAATTATTAGATAAGCGTATTAAGACAGAAGAAGATGTTGAATCGCAACTAGGATTACCTATTT
TAGGTTCAATACAAAAATTTTAA

Upstream 100 bases:

>100_bases
AATGTAGTTGTGTATGTTTTGTGGTCGTTAAACTAGATATAATTGTCCGATTTATAAAACATACATAATGAATACAATGA
TTGATTATGTGGAGGAAACC

Downstream 100 bases:

>100_bases
TTTACGAGGAATTACCATGACGAATACACGAAGAAGTACATCAAGTTTAATTGTCCATGAACAACCAAAGTCACCTATTA
GCGAGAAATTTCGAGGCATA

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSTALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEII
KSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNRISKVFAHDMPKIMSVDNVTILSSAH
DNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF

Sequences:

>Translated_220_residues
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSTALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEII
KSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNRISKVFAHDMPKIMSVDNVTILSSAH
DNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
>Mature_220_residues
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSTALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEII
KSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNRISKVFAHDMPKIMSVDNVTILSSAH
DNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG3944

COG function: function code M; Capsular polysaccharide biosynthesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsC/CapA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003856 [H]

Pfam domain/function: PF02706 Wzz [H]

EC number: NA

Molecular weight: Translated: 24398; Mature: 24398

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSTALTFFVMPDKYTASTQILVNMKKSSSD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCH
LAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEE
VTTGNKSESDKIVNRISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIV
EECCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCEEECHHHHHHHHHHHHH
GIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSTALTFFVMPDKYTASTQILVNMKKSSSD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCH
LAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEE
VTTGNKSESDKIVNRISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIV
EECCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCEEECHHHHHHHHHHHHH
GIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA