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The map label for this gene is yodF [H]

Identifier: 148260446

GI number: 148260446

Start: 1606353

End: 1607882

Strand: Reverse

Name: yodF [H]

Synonym: Acry_1445

Alternate gene names: 148260446

Gene position: 1607882-1606353 (Counterclockwise)

Preceding gene: 148260447

Following gene: 148260445

Centisome position: 47.44

GC content: 62.48

Gene sequence:

>1530_bases
ATGCTCATAGCCGGTATCGTCTTCGCCGTCCTCGTGGTCGGCGTTCTCATCCTGGGGTTCTTCGCTGCACGCTGGCGCGG
CGGTGACCTCGACCAGCTTCACGAATGGGGGCTTGGCGGCCGCCAGTTCGGCACGCTGATTTCCTGGTTCCTGATCGGCG
GCGATCTTTATACGGCCTATACGTTCATTGCCGTGCCCGCGCTGATGTTCGGCGCAGGCGCCATCGCCTTCTTCGCGGTG
CCATACACCATCGTCGCCTATCCGATCCTGTATGTTGTGTTTCCGAAAATGTGGCGGGTTGCCGCCAAATACGGTTTCGT
CACCGGGCCAGAGTTTGTCAGAGGCCGCTATGGCAACCGCTGGCTTGCGCTTGCGGTGGGTATCACTGGCATCATCGCGA
CCATGCCCTATATCGCGTTGCAGCTTGTCGGCATGCAGGTGGTCATCGGCGCGTTCAACCTCGGTACCGGGTTCGGCAGT
CATCTCCCGCTGATCCTGGCCTTCCTCGTGCTCGCCGCCTTCACCTACACGTCGGGCCTTCGCGCGCCGGCGATGATCGC
TGTGGTCAAGGACACGCTGATCTACCTCACCATCATCGTGGCGATCTTCGCGATCCCGGCCTCGCTGGGCGGGTTCGGAC
ATATTTTCGCGAAGATCGCCTCCACCAAGCTGCTGCTGCCGAAGCCAGGCCCGCATACCACCGGGCTTTATTCTGGCTAT
GCGACGCTGGCACTCGGCTCGGCGATGGCGCTGTTCCTGTATCCCCACGCGTTGACCGGCATCCTGTCGTCGCGCTCGAG
CGAGACGGTGCGAAAAAACGCGGTGATCCTGCCGGCCTATTCGCTGATGCTCGGCCTGATCACCCTGCTCGGCGCCATGG
CGGTGGCAGCCGGCGTTTCCGCGCTGCCCCAGTTCGCCGCGGGCTTCAAAGCCTATGGGCCGAGTTTCGCCGTGCCGGCG
CTGCTGATCCATACCTTGCCGGGCTGGTTTGTCGGCATTGCCTTTGCCGCCATCGCGATCGGCGCCCTGGTGCCTGCCGC
GATCATGGCGATTGCCTCGGCGAACATCTTCACGCGCGACATCTGGAAGGAATTCGTCTCCCCCGGCGTATCGGCGGCGG
CGGAATCGCAGATCGCCAAGCTGTTCTCGATCGTGATGATTATCGGAGCGCTGCTGTTCATCTTCGGCCTGCCGCTGAAG
TACGCGATCCAGTTGCAGCTGCTTGGCGGCATGTGGATGATCCAGATCTTTCCGGCCATCGTATTCAGCCTGTTCACCCG
GTTCTACAACGGATGGGCGTTGCTGGTCGGCTGGGCGGTGGGCATCGGCCTTGCGACGCATTTCGCGTTGCTGAACCATC
TCAAGGGCGCGATCTATCCGTTCCACATCGGTGGGATGACCTATCCGTGCTACATTGCGCTGGCCACCTTCGTCGTGAAC
GTGATCGTGGCCACCGCGCTATCGCCGGTGTTCCACGCCATCAAGTCGGACCGCACGCGCGACGTGACCACCAGCGCCGA
CTACGCCTGA

Upstream 100 bases:

>100_bases
TAGGCTTTCCCTTTTTCTATTGGTACCAGCTCGCCTGGGTGGTGATCTCGTCGGTCATCATCTGGATCGTCTGGCGCGCC
GAAAGCTAAGGAACGTCGCC

Downstream 100 bases:

>100_bases
GGGATGGTGCGTCTTTCGCGCCAGTGTCGATGAGCGGTTCCACGTCCCGCAGGCGCGGGGCCGCTTTCGGCTTCATCATG
GCCACGATCCTGCTGGACAT

Product: Na+/solute symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MLIAGIVFAVLVVGVLILGFFAARWRGGDLDQLHEWGLGGRQFGTLISWFLIGGDLYTAYTFIAVPALMFGAGAIAFFAV
PYTIVAYPILYVVFPKMWRVAAKYGFVTGPEFVRGRYGNRWLALAVGITGIIATMPYIALQLVGMQVVIGAFNLGTGFGS
HLPLILAFLVLAAFTYTSGLRAPAMIAVVKDTLIYLTIIVAIFAIPASLGGFGHIFAKIASTKLLLPKPGPHTTGLYSGY
ATLALGSAMALFLYPHALTGILSSRSSETVRKNAVILPAYSLMLGLITLLGAMAVAAGVSALPQFAAGFKAYGPSFAVPA
LLIHTLPGWFVGIAFAAIAIGALVPAAIMAIASANIFTRDIWKEFVSPGVSAAAESQIAKLFSIVMIIGALLFIFGLPLK
YAIQLQLLGGMWMIQIFPAIVFSLFTRFYNGWALLVGWAVGIGLATHFALLNHLKGAIYPFHIGGMTYPCYIALATFVVN
VIVATALSPVFHAIKSDRTRDVTTSADYA

Sequences:

>Translated_509_residues
MLIAGIVFAVLVVGVLILGFFAARWRGGDLDQLHEWGLGGRQFGTLISWFLIGGDLYTAYTFIAVPALMFGAGAIAFFAV
PYTIVAYPILYVVFPKMWRVAAKYGFVTGPEFVRGRYGNRWLALAVGITGIIATMPYIALQLVGMQVVIGAFNLGTGFGS
HLPLILAFLVLAAFTYTSGLRAPAMIAVVKDTLIYLTIIVAIFAIPASLGGFGHIFAKIASTKLLLPKPGPHTTGLYSGY
ATLALGSAMALFLYPHALTGILSSRSSETVRKNAVILPAYSLMLGLITLLGAMAVAAGVSALPQFAAGFKAYGPSFAVPA
LLIHTLPGWFVGIAFAAIAIGALVPAAIMAIASANIFTRDIWKEFVSPGVSAAAESQIAKLFSIVMIIGALLFIFGLPLK
YAIQLQLLGGMWMIQIFPAIVFSLFTRFYNGWALLVGWAVGIGLATHFALLNHLKGAIYPFHIGGMTYPCYIALATFVVN
VIVATALSPVFHAIKSDRTRDVTTSADYA
>Mature_509_residues
MLIAGIVFAVLVVGVLILGFFAARWRGGDLDQLHEWGLGGRQFGTLISWFLIGGDLYTAYTFIAVPALMFGAGAIAFFAV
PYTIVAYPILYVVFPKMWRVAAKYGFVTGPEFVRGRYGNRWLALAVGITGIIATMPYIALQLVGMQVVIGAFNLGTGFGS
HLPLILAFLVLAAFTYTSGLRAPAMIAVVKDTLIYLTIIVAIFAIPASLGGFGHIFAKIASTKLLLPKPGPHTTGLYSGY
ATLALGSAMALFLYPHALTGILSSRSSETVRKNAVILPAYSLMLGLITLLGAMAVAAGVSALPQFAAGFKAYGPSFAVPA
LLIHTLPGWFVGIAFAAIAIGALVPAAIMAIASANIFTRDIWKEFVSPGVSAAAESQIAKLFSIVMIIGALLFIFGLPLK
YAIQLQLLGGMWMIQIFPAIVFSLFTRFYNGWALLVGWAVGIGLATHFALLNHLKGAIYPFHIGGMTYPCYIALATFVVN
VIVATALSPVFHAIKSDRTRDVTTSADYA

Specific function: Unknown

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 54123; Mature: 54123

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]